Variant report

Variant	rs58157105
Chromosome Location	chr8:103700939-103700940
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:103667482..103670285-chr8:103698237..103701283,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155090	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11778738	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12542591	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55635906	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55719258	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58473330	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59808494	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9642980	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv1026755	chr8:103676970-103728556	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1018625	chr8:103676970-103729197	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103679800-103706400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:103690200-103704800	Weak transcription	A549	lung
3	chr8:103698400-103701200	Weak transcription	Ovary	ovary
4	chr8:103698400-103704000	Weak transcription	Gastric	stomach
5	chr8:103698600-103701000	Weak transcription	Fetal Stomach	stomach
6	chr8:103698600-103704400	Weak transcription	NH-A	brain
7	chr8:103699400-103704200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr8:103699400-103704200	Weak transcription	NHLF	lung
9	chr8:103699400-103704400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr8:103699400-103704600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr8:103700000-103701400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr8:103700000-103701400	Enhancers	Fetal Muscle Trunk	muscle
13	chr8:103700200-103701200	Enhancers	HSMM	muscle
14	chr8:103700200-103701400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr8:103700200-103701400	Enhancers	HUVEC	blood vessel
16	chr8:103700200-103701400	Enhancers	K562	blood
17	chr8:103700400-103701200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr8:103700400-103701400	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr8:103700400-103701400	Enhancers	Muscle Satellite Cultured Cells	--
20	chr8:103700400-103701400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr8:103700400-103701400	Enhancers	HMEC	breast
22	chr8:103700400-103701600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr8:103700400-103701600	Enhancers	Placenta	Placenta
24	chr8:103700400-103701600	Enhancers	HSMMtube	muscle
25	chr8:103700600-103701000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr8:103700600-103701200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr8:103700600-103701200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr8:103700600-103701200	Enhancers	NHEK	skin
29	chr8:103700600-103701400	Enhancers	Fetal Muscle Leg	muscle
30	chr8:103700600-103701400	Enhancers	Pancreas	Pancrea
31	chr8:103700600-103701600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr8:103700800-103701200	Enhancers	Osteobl	bone
33	chr8:103700800-103704400	Weak transcription	Hela-S3	cervix

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links