Variant report

Variant	rs58167874
Chromosome Location	chr19:37795603-37795604
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs55850607	0.91[AFR][1000 genomes]
rs56235955	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58968599	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60035707	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60193080	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73629609	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3507199	chr19:37284708-37805639	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	esv3507200	chr19:37284708-37805639	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv9717	chr19:37721760-37796698	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv3520361	chr19:37745067-37811325	Active TSS Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv3520362	chr19:37745067-37811325	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv978811	chr19:37749967-37820517	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv821351	chr19:37756399-37796493	Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
9	esv3337270	chr19:37758512-37795610	ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Genic enhancers Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
10	esv3369946	chr19:37758512-37795610	ZNF genes & repeats Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
11	esv3377915	chr19:37758512-37795610	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Genic enhancers	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
12	esv3416120	chr19:37758512-37795610	ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
13	esv3430128	chr19:37758512-37795610	Weak transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
14	esv3390818	chr19:37758512-37795710	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Bivalent Enhancer Genic enhancers	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
15	esv2757695	chr19:37794850-38051606	Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
16	esv2758759	chr19:37794850-38051606	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37794400-37795800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
2	chr19:37794400-37795800	Active TSS	iPS-15b Cell Line	embryonic stem cell
3	chr19:37794400-37795800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr19:37794400-37795800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr19:37794400-37795800	Active TSS	Brain Cingulate Gyrus	brain
6	chr19:37794400-37795800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
7	chr19:37794400-37795800	Active TSS	Pancreatic Islets	Pancreatic Islet
8	chr19:37794400-37795800	Active TSS	Rectal Smooth Muscle	rectum
9	chr19:37794400-37795800	Active TSS	Stomach Smooth Muscle	stomach
10	chr19:37794400-37796000	ZNF genes & repeats	Brain Germinal Matrix	brain
11	chr19:37794400-37796400	ZNF genes & repeats	Pancreas	Pancrea
12	chr19:37794400-37796600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr19:37794400-37796600	ZNF genes & repeats	Liver	Liver
14	chr19:37794400-37796600	ZNF genes & repeats	Lung	lung
15	chr19:37794400-37797200	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
16	chr19:37794400-37797200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
17	chr19:37794400-37797400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
18	chr19:37794400-37798400	ZNF genes & repeats	Fetal Brain Female	brain
19	chr19:37794600-37795800	Active TSS	ES-I3 Cell Line	embryonic stem cell
20	chr19:37794600-37795800	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr19:37794600-37795800	Active TSS	Right Atrium	heart
22	chr19:37794600-37795800	ZNF genes & repeats	HSMM	muscle
23	chr19:37794600-37796000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
24	chr19:37794600-37796000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr19:37794600-37796000	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr19:37794600-37796000	ZNF genes & repeats	Colonic Mucosa	Colon
27	chr19:37794600-37796000	ZNF genes & repeats	Placenta	Placenta
28	chr19:37794600-37796000	ZNF genes & repeats	Spleen	Spleen
29	chr19:37794600-37796200	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
30	chr19:37794600-37796200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
31	chr19:37794600-37796200	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
32	chr19:37794600-37796400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr19:37794800-37796000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
34	chr19:37795000-37795800	Active TSS	Brain Substantia Nigra	brain
35	chr19:37795400-37796000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
36	chr19:37795600-37795800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
37	chr19:37795600-37795800	ZNF genes & repeats	Adipose Nuclei	Adipose
38	chr19:37795600-37795800	Flanking Active TSS	Brain Hippocampus Middle	brain
39	chr19:37795600-37795800	Enhancers	Brain Inferior Temporal Lobe	brain

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