Variant report

Variant	rs58169693
Chromosome Location	chr9:72762277-72762278
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:72762270..72763345-chr9:72843683..72845020,7	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049457	chr9:72539144-72765913	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1047862	chr9:72746875-73138287	Enhancers Strong transcription Genic enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv614582	chr9:72758742-72763436	Strong transcription Weak transcription Genic enhancers Active TSS Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv3483551	chr9:72760232-72765130	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	esv3483553	chr9:72761434-72764184	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	esv3483554	chr9:72761767-72764058	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv824946	chr9:72762006-72763432	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv824947	chr9:72762006-72764750	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	esv16659	chr9:72762238-72763468	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv614583	chr9:72762261-72763036	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	nsv614584	chr9:72762261-72763144	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
12	nsv614585	chr9:72762261-72763262	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
13	nsv614586	chr9:72762261-72763436	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72725800-72764200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:72726800-72785200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr9:72727000-72776200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr9:72731200-72768400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr9:72740600-72766400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr9:72741400-72765600	Weak transcription	Esophagus	oesophagus
7	chr9:72741600-72775400	Weak transcription	Adipose Nuclei	Adipose
8	chr9:72741600-72789400	Weak transcription	Spleen	Spleen
9	chr9:72746600-72762600	Weak transcription	Psoas Muscle	Psoas
10	chr9:72749800-72762600	Weak transcription	Fetal Stomach	stomach
11	chr9:72749800-72763000	Weak transcription	Lung	lung
12	chr9:72750400-72762600	Weak transcription	Fetal Muscle Leg	muscle
13	chr9:72750400-72771600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr9:72751000-72771800	Weak transcription	Aorta	Aorta
15	chr9:72752000-72779600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr9:72752400-72775200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
17	chr9:72752600-72771400	Weak transcription	NH-A	brain
18	chr9:72753800-72770000	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr9:72754800-72764200	Strong transcription	Stomach Smooth Muscle	stomach
20	chr9:72755400-72765800	Weak transcription	Left Ventricle	heart
21	chr9:72758800-72772200	Weak transcription	Colonic Mucosa	Colon
22	chr9:72759000-72763800	Strong transcription	Colon Smooth Muscle	Colon
23	chr9:72759200-72774400	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr9:72759600-72800000	Weak transcription	Right Ventricle	heart
25	chr9:72759800-72774000	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr9:72759800-72792200	Weak transcription	HMEC	breast
27	chr9:72760000-72768600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr9:72760000-72785200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr9:72760400-72765400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr9:72761000-72767400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr9:72761200-72768400	Weak transcription	HSMM	muscle
32	chr9:72761600-72762400	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr9:72761600-72762400	Weak transcription	HSMMtube	muscle
34	chr9:72761600-72763000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr9:72761600-72766000	Weak transcription	Rectal Smooth Muscle	rectum
36	chr9:72761800-72762800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr9:72762000-72763400	Enhancers	Skeletal Muscle Female	skeletal muscle
38	chr9:72762200-72762800	Strong transcription	Ovary	ovary
39	chr9:72762200-72763200	Enhancers	Skeletal Muscle Male	skeletal muscle

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