Variant report

Variant	rs58176469
Chromosome Location	chr15:73976917-73976918
allele	-/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:73)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:73 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TAF1	chr15:73976252-73976973	HepG2	liver:	n/a	n/a
2	TBP	chr15:73975961-73976923	H1-hESC	embryonic stem cell:	n/a	n/a
3	MAX	chr15:73976177-73977109	HepG2	liver:	n/a	n/a
4	MAZ	chr15:73975912-73977192	K562	blood:	n/a	n/a
5	TAF1	chr15:73976415-73977001	H1-hESC	embryonic stem cell:	n/a	n/a
6	ELF1	chr15:73976885-73977264	K562	blood:	n/a	n/a
7	REST	chr15:73975721-73978190	H1-neurons	neurons:	n/a	chr15:73976590-73976603 chr15:73977028-73977041 chr15:73976851-73976864 chr15:73976907-73976920 chr15:73976087-73976096
8	POLR2A	chr15:73976244-73977474	H1-hESC	embryonic stem cell:	n/a	n/a
9	POLR2A	chr15:73975950-73977872	H1-neurons	neurons:	n/a	n/a
10	ZBTB7A	chr15:73976759-73977807	ECC-1	luminal epithelium:	n/a	n/a
11	POLR2A	chr15:73976516-73976931	A549	lung:	n/a	n/a
12	POLR2A	chr15:73976577-73976938	MCF10A-Er-Src	breast:	n/a	n/a
13	MAX	chr15:73975961-73976976	MCF-7	breast:	n/a	n/a
14	POLR2A	chr15:73976326-73977003	MCF-7	breast:	n/a	n/a
15	POLR2A	chr15:73976051-73977459	Hela-S3	cervix:	n/a	n/a
16	MAX	chr15:73975994-73977034	A549	lung:	n/a	n/a
17	POLR2A	chr15:73976106-73979724	IMR90	lung:	n/a	n/a
18	E2F6	chr15:73976473-73976929	K562	blood:	n/a	n/a
19	CHD2	chr15:73975942-73977765	Hela-S3	cervix:	n/a	n/a
20	POLR2A	chr15:73976645-73976947	ECC-1	luminal epithelium:	n/a	n/a
21	HMGN3	chr15:73976465-73976931	K562	blood:	n/a	n/a
22	POLR2A	chr15:73976509-73976939	Hela-S3	cervix:	n/a	n/a
23	POLR2A	chr15:73976514-73976966	Hela-S3	cervix:	n/a	n/a
24	POLR2A	chr15:73976403-73976948	Gliobla	brain:	n/a	n/a
25	POLR2A	chr15:73976177-73977022	Hela-S3	cervix:	n/a	n/a
26	FOXP2	chr15:73976280-73976975	PFSK-1	brain:	n/a	n/a
27	ELF1	chr15:73976889-73977311	HepG2	liver:	n/a	n/a
28	POLR2A	chr15:73976187-73976988	ProgFib	skin:	n/a	n/a
29	POLR2A	chr15:73975912-73977770	H1-neurons	neurons:	n/a	n/a
30	YY1	chr15:73976349-73976994	HepG2	liver:	n/a	chr15:73976851-73976865
31	POLR2A	chr15:73976470-73976956	H1-hESC	embryonic stem cell:	n/a	n/a
32	POLR2A	chr15:73975969-73976991	PFSK-1	brain:	n/a	n/a
33	POLR2A	chr15:73976465-73976947	MCF-7	breast:	n/a	n/a
34	MXI1	chr15:73975959-73977393	HepG2	liver:	n/a	n/a
35	POLR2A	chr15:73976000-73977338	HepG2	liver:	n/a	n/a
36	POLR2A	chr15:73976251-73976943	HUVEC	blood vessel:	n/a	n/a
37	HEY1	chr15:73976516-73976924	HepG2	liver:	n/a	chr15:73976602-73976617
38	TAF1	chr15:73976469-73976935	HepG2	liver:	n/a	n/a
39	SIN3AK20	chr15:73976915-73977215	H1-hESC	embryonic stem cell:	n/a	n/a
40	SMARCB1	chr15:73975754-73977778	Hela-S3	cervix:	n/a	chr15:73977729-73977738
41	POLR2A	chr15:73976533-73977427	HepG2	liver:	n/a	n/a
42	SIN3A	chr15:73975988-73977643	H1-hESC	embryonic stem cell:	n/a	chr15:73976907-73976920 chr15:73976590-73976603
43	MAX	chr15:73976403-73976966	K562	blood:	n/a	n/a
44	MAX	chr15:73975966-73977772	Hela-S3	cervix:	n/a	n/a
45	MAZ	chr15:73975997-73977509	HepG2	liver:	n/a	n/a
46	MYC	chr15:73976267-73976933	MCF10A-Er-Src	breast:	n/a	n/a
47	POLR2A	chr15:73975986-73977396	HepG2	liver:	n/a	n/a
48	HEY1	chr15:73976493-73976967	HepG2	liver:	n/a	chr15:73976602-73976617
49	TAF1	chr15:73976655-73976939	SK-N-SH	brain:	n/a	n/a
50	POLR2A	chr15:73976436-73976945	A549	lung:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:73976209..73977099-chr5:179050114..179050702,2	Hela-S3	cervix:
2	chr15:73923335..73928580-chr15:73974636..73980559,10	MCF-7	breast:
3	chr15:73976707..73977570-chr17:73266758..73267281,2	HCT-116	colon:
4	chr15:73975489..73977527-chr15:73994222..73997098,2	MCF-7	breast:
5	chr15:73921937..73932817-chr15:73973872..73983627,19	MCF-7	breast:
6	chr15:73975048..73981150-chr15:73987719..73994346,13	MCF-7	breast:
7	chr15:73976691..73979215-chr15:74216849..74218653,2	MCF-7	breast:

No data

Variant related genes	Relation type
CD276	TF binding region
ENSG00000103855	Chromatin interaction
ENSG00000125457	Chromatin interaction
ENSG00000169045	Chromatin interaction
ENSG00000261801	Chromatin interaction
ENSG00000156642	Chromatin interaction
ENSG00000129038	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037540	chr15:73712637-73982420	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv3434440	chr15:73975149-73978997	Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Weak transcription Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv3341618	chr15:73975424-73978272	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73972000-73977000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr15:73975800-73977000	Active TSS	Brain Cingulate Gyrus	brain
3	chr15:73975800-73977200	Enhancers	Fetal Brain Male	brain
4	chr15:73975800-73978000	Active TSS	HUES6 Cell Line	embryonic stem cell
5	chr15:73975800-73978000	Active TSS	iPS-20b Cell Line	embryonic stem cell
6	chr15:73975800-73978200	Active TSS	ES-I3 Cell Line	embryonic stem cell
7	chr15:73975800-73978200	Active TSS	HUES64 Cell Line	embryonic stem cell
8	chr15:73976000-73977000	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
9	chr15:73976000-73977000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
10	chr15:73976000-73977200	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
11	chr15:73976000-73977200	Active TSS	Brain Anterior Caudate	brain
12	chr15:73976000-73977600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr15:73976000-73977800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr15:73976000-73977800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
15	chr15:73976000-73977800	Active TSS	Fetal Kidney	kidney
16	chr15:73976000-73978000	Active TSS	HUES48 Cell Line	embryonic stem cell
17	chr15:73976000-73978000	Active TSS	Pancreatic Islets	Pancreatic Islet
18	chr15:73976000-73978200	Active TSS	H9 Cell Line	embryonic stem cell
19	chr15:73976000-73978200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr15:73976000-73978400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
21	chr15:73976000-73978600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr15:73976200-73977000	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
23	chr15:73976200-73977000	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
24	chr15:73976200-73977800	Active TSS	Gastric	stomach
25	chr15:73976200-73978000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr15:73976200-73978000	Active TSS	Brain Angular Gyrus	brain
27	chr15:73976200-73978000	Active TSS	Brain Germinal Matrix	brain
28	chr15:73976200-73978000	Active TSS	Brain Hippocampus Middle	brain
29	chr15:73976200-73978000	Active TSS	Duodenum Smooth Muscle	Duodenum
30	chr15:73976200-73978000	Active TSS	HSMMtube	muscle
31	chr15:73976200-73978200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr15:73976200-73978200	Active TSS	Aorta	Aorta
33	chr15:73976400-73977000	Active TSS	Adipose Nuclei	Adipose
34	chr15:73976400-73977000	Active TSS	Esophagus	oesophagus
35	chr15:73976400-73977200	Active TSS	Cortex derived primary cultured neurospheres	brain
36	chr15:73976400-73977200	Active TSS	Brain Inferior Temporal Lobe	brain
37	chr15:73976400-73977200	Active TSS	Brain Substantia Nigra	brain
38	chr15:73976400-73977200	Active TSS	Duodenum Mucosa	Duodenum
39	chr15:73976400-73977200	Active TSS	Placenta	Placenta
40	chr15:73976400-73977200	Active TSS	Pancreas	Pancrea
41	chr15:73976400-73977200	Active TSS	Skeletal Muscle Male	skeletal muscle
42	chr15:73976400-73977200	Active TSS	Skeletal Muscle Female	skeletal muscle
43	chr15:73976400-73977200	Active TSS	HUVEC	blood vessel
44	chr15:73976400-73977400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr15:73976400-73977400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr15:73976400-73977400	Weak transcription	Fetal Heart	heart
47	chr15:73976400-73977400	Active TSS	Fetal Intestine Small	intestine
48	chr15:73976400-73977400	Active TSS	Sigmoid Colon	Sigmoid Colon
49	chr15:73976400-73977600	Active TSS	Breast Myoepithelial Primary Cells	Breast
50	chr15:73976400-73977600	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin

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