Variant report

Variant	rs58177718
Chromosome Location	chr1:10895024-10895025
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:10892296..10895253-chr1:10897751..10901247,3	K562	blood:
2	chr1:10882954..10889403-chr1:10891369..10897064,9	MCF-7	breast:
3	chr1:10889433..10892912-chr1:10893269..10895457,3	MCF-7	breast:
4	chr1:10892514..10895346-chr1:10924391..10927017,2	K562	blood:
5	chr1:10887422..10891418-chr1:10892933..10896099,4	K562	blood:
6	chr1:10893753..10896374-chr1:10897751..10899906,2	K562	blood:
7	chr1:10886250..10887868-chr1:10894690..10896395,2	MCF-7	breast:
8	chr1:10888572..10890725-chr1:10893676..10896099,3	K562	blood:
9	chr1:10890948..10893091-chr1:10894513..10897214,2	MCF-7	breast:

No data

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11806245	0.81[EUR][1000 genomes]
rs58349752	0.81[EUR][1000 genomes]
rs72864618	0.85[EUR][1000 genomes]
rs7514293	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529981	chr1:10697093-11353487	Weak transcription Enhancers Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
2	esv2757723	chr1:10742502-11055147	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	esv2758921	chr1:10742502-11055147	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv870589	chr1:10840905-10901994	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv871617	chr1:10858746-10935232	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv871155	chr1:10858746-10998509	Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	esv1825837	chr1:10887923-11093741	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:10883600-10902800	Weak transcription	Right Atrium	heart
2	chr1:10885000-10895600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:10889000-10895800	Weak transcription	Pancreas	Pancrea
4	chr1:10891000-10895200	Weak transcription	Fetal Heart	heart
5	chr1:10893400-10895800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr1:10893400-10895800	Weak transcription	HMEC	breast
7	chr1:10894400-10895600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr1:10894600-10895200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr1:10894600-10895200	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
10	chr1:10894600-10896400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr1:10894800-10895200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
12	chr1:10894800-10895800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr1:10894800-10895800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
14	chr1:10894800-10896400	Bivalent Enhancer	Fetal Brain Male	brain
15	chr1:10895000-10895200	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
16	chr1:10895000-10895200	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
17	chr1:10895000-10895200	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
18	chr1:10895000-10895200	Flanking Active TSS	Brain Germinal Matrix	brain
19	chr1:10895000-10895200	Bivalent Enhancer	Fetal Lung	lung
20	chr1:10895000-10895200	Bivalent Enhancer	Fetal Thymus	thymus
21	chr1:10895000-10895800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
22	chr1:10895000-10896400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr1:10895000-10896400	Bivalent Enhancer	Fetal Stomach	stomach
24	chr1:10895000-10900200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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