Variant report

Variant	rs58178499
Chromosome Location	chr2:124943639-124943640
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10496630	1.00[EUR][1000 genomes]
rs58304844	1.00[EUR][1000 genomes]
rs59266556	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72962873	1.00[EUR][1000 genomes]
rs72962897	1.00[EUR][1000 genomes]
rs749197	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531408	chr2:124727329-125011247	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv874989	chr2:124892592-125176030	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:124938600-124954400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr2:124942800-124945800	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr2:124942800-124947200	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr2:124943200-124943800	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr2:124943200-124945600	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr2:124943200-124945800	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr2:124943400-124944000	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr2:124943400-124945800	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr2:124943600-124944400	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr2:124943600-124945200	Enhancers	iPS-20b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links