The 2.0 version of rSNPBase

Variant report

Variant rs58182652
Chromosome Location chr2:172347105-172347106
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:42 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:172306000-172348000 Weak transcription iPS-15b Cell Line embryonic stem cell
2 chr2:172309600-172348400 Weak transcription Fetal Heart heart
3 chr2:172327200-172348800 Weak transcription Spleen Spleen
4 chr2:172327400-172347600 Weak transcription Brain Cingulate Gyrus brain
5 chr2:172333400-172347800 Weak transcription Brain Angular Gyrus brain
6 chr2:172334600-172349200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
7 chr2:172334800-172347200 Weak transcription Brain Inferior Temporal Lobe brain
8 chr2:172334800-172349200 Weak transcription Esophagus oesophagus
9 chr2:172335400-172349000 Weak transcription Cortex derived primary cultured neurospheres brain
10 chr2:172337800-172348000 Weak transcription Brain Substantia Nigra brain
11 chr2:172338000-172349400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
12 chr2:172338400-172349800 Weak transcription Rectal Mucosa Donor 29 rectum
13 chr2:172339600-172347800 Weak transcription H9 Cell Line embryonic stem cell
14 chr2:172339600-172348000 Weak transcription Primary T helper naive cells from peripheral blood blood
15 chr2:172339800-172348000 Weak transcription iPS-20b Cell Line embryonic stem cell
16 chr2:172339800-172350600 Weak transcription Primary T cells fromperipheralblood blood
17 chr2:172339800-172352200 Weak transcription H1 Cell Line embryonic stem cell
18 chr2:172340000-172347800 Weak transcription HUES64 Cell Line embryonic stem cell
19 chr2:172340000-172348000 Weak transcription ES-I3 Cell Line embryonic stem cell
20 chr2:172340000-172348000 Weak transcription iPS-18 Cell Line embryonic stem cell
21 chr2:172340000-172348000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
22 chr2:172340000-172348600 Weak transcription Ovary ovary
23 chr2:172340000-172351200 Weak transcription Aorta Aorta
24 chr2:172340000-172368400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
25 chr2:172340400-172348000 Weak transcription HUES6 Cell Line embryonic stem cell
26 chr2:172341000-172348000 Weak transcription HUES48 Cell Line embryonic stem cell
27 chr2:172342200-172348200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
28 chr2:172342200-172348600 Weak transcription Primary T helper cells fromperipheralblood blood
29 chr2:172344800-172348600 Enhancers Rectal Mucosa Donor 31 rectum
30 chr2:172345400-172348200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
31 chr2:172345800-172348000 Weak transcription Dnd41 blood
32 chr2:172346000-172353000 Weak transcription Primary T cells from cord blood blood
33 chr2:172346200-172347200 Weak transcription Liver Liver
34 chr2:172346200-172348800 Weak transcription Primary hematopoietic stem cells short term culture blood
35 chr2:172346800-172347200 Enhancers Duodenum Mucosa Duodenum
36 chr2:172346800-172347400 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
37 chr2:172346800-172347400 Enhancers Hela-S3 cervix
38 chr2:172346800-172347600 Enhancers NHEK skin
39 chr2:172346800-172348400 Enhancers Colonic Mucosa Colon
40 chr2:172347000-172347200 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
41 chr2:172347000-172347200 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
42 chr2:172347000-172347200 Enhancers HMEC breast

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Last update: Aug 31, 2015