Variant report

Variant	rs581847
Chromosome Location	chr4:127366352-127366353
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11098868	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1396529	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879906	chr4:127354073-127414252	Enhancers ZNF genes & repeats Weak transcription Genic enhancers Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
2	nsv964313	chr4:127366199-127370561	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127346200-127388400	Weak transcription	K562	blood
2	chr4:127361000-127367200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr4:127361000-127367400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr4:127361400-127367600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:127362800-127367200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr4:127363000-127367000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr4:127363000-127367000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr4:127363000-127367200	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr4:127363000-127369400	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr4:127363200-127367600	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr4:127363200-127368200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr4:127363200-127368200	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr4:127365800-127367400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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