Variant report
Variant | rs58185066 |
---|---|
Chromosome Location | chr5:164398523-164398524 |
allele | G/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:6)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:6 , 50 per page) page:
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No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | GATA3 | chr5:164398501-164398962 | T-47D | breast: | n/a | n/a |
2 | ESR1 | chr5:164398513-164398978 | T-47D | breast: | n/a | n/a |
3 | JUND | chr5:164398516-164399379 | T-47D | breast: | n/a | n/a |
4 | JUND | chr5:164398485-164399063 | T-47D | breast: | n/a | n/a |
5 | EP300 | chr5:164398485-164399019 | T-47D | breast: | n/a | n/a |
6 | FOXA1 | chr5:164398521-164399015 | T-47D | breast: | n/a | n/a |
No data |
No data |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000241956 | TF binding region |
rs_ID | r2[population] |
---|---|
rs58124559 | 1.00[AMR][1000 genomes] |
rs73351660 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73351662 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv995060 | chr5:163660200-164620500 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
2 | nsv528624 | chr5:164319435-164701201 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
3 | nsv600242 | chr5:164391457-164466785 | Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
No data |