Variant report

Variant	rs58186060
Chromosome Location	chr13:51149886-51149887
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:51148960..51151212-chr13:51161969..51163948,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10492409	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17074617	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56288756	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57580019	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58994213	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73485685	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73485691	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73485701	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7993968	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs881865	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035151	chr13:50513535-51167850	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1254 gene(s)	inside rSNPs	diseases
2	esv2753964	chr13:50545399-51421199	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
3	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
4	esv2753864	chr13:51136699-51375199	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv3406199	chr13:51145751-51150149	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51146200-51151200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr13:51146600-51150200	Weak transcription	Right Atrium	heart
3	chr13:51146800-51150400	Weak transcription	Adipose Nuclei	Adipose
4	chr13:51147200-51151200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr13:51147200-51151200	Enhancers	Osteobl	bone
6	chr13:51147600-51151000	Enhancers	Gastric	stomach
7	chr13:51147600-51151200	Enhancers	HSMM	muscle
8	chr13:51147800-51160800	Weak transcription	Dnd41	blood
9	chr13:51148000-51152400	Weak transcription	Psoas Muscle	Psoas
10	chr13:51148200-51150400	Enhancers	HepG2	liver
11	chr13:51148200-51151400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr13:51148400-51151000	Enhancers	Muscle Satellite Cultured Cells	--
13	chr13:51148600-51150000	Enhancers	NH-A	brain
14	chr13:51148800-51151400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr13:51148800-51151600	Enhancers	Fetal Muscle Leg	muscle
16	chr13:51149000-51150000	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr13:51149000-51150200	Enhancers	Fetal Heart	heart
18	chr13:51149000-51150200	Weak transcription	Right Ventricle	heart
19	chr13:51149000-51150600	Weak transcription	NHDF-Ad	bronchial
20	chr13:51149000-51151200	Enhancers	HSMMtube	muscle
21	chr13:51149200-51151200	Enhancers	Fetal Thymus	thymus
22	chr13:51149400-51150200	Enhancers	Fetal Kidney	kidney
23	chr13:51149400-51150800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr13:51149400-51151200	Enhancers	Left Ventricle	heart
25	chr13:51149400-51151200	Enhancers	Pancreas	Pancrea
26	chr13:51149400-51151200	Enhancers	Rectal Mucosa Donor 31	rectum
27	chr13:51149400-51151200	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr13:51149600-51150000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr13:51149600-51162200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr13:51149800-51150200	Enhancers	Skeletal Muscle Female	skeletal muscle
31	chr13:51149800-51151000	Enhancers	Small Intestine	intestine
32	chr13:51149800-51151000	Enhancers	Thymus	Thymus
33	chr13:51149800-51151200	Enhancers	Liver	Liver
34	chr13:51149800-51151200	Enhancers	Stomach Mucosa	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links