Variant report

Variant	rs581876
Chromosome Location	chr9:22022376-22022377
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1008878	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10115049	0.90[ASN][1000 genomes]
rs1063192	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10757263	0.87[ASN][1000 genomes]
rs10757264	0.89[ASN][1000 genomes]
rs10757265	0.80[ASN][1000 genomes]
rs10757266	0.80[ASN][1000 genomes]
rs10757267	0.80[ASN][1000 genomes]
rs10811640	0.87[ASN][1000 genomes]
rs10811643	0.90[ASN][1000 genomes]
rs10811644	0.90[ASN][1000 genomes]
rs10965212	0.90[ASN][1000 genomes]
rs10965215	0.90[ASN][1000 genomes]
rs10965219	0.80[ASN][1000 genomes]
rs1101329	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1101330	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1333036	0.80[ASN][1000 genomes]
rs1333037	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1360589	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1360590	0.80[ASN][1000 genomes]
rs1412829	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1412830	0.83[AFR][1000 genomes]
rs1556515	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1591136	0.90[ASN][1000 genomes]
rs2106119	0.89[ASN][1000 genomes]
rs2106120	0.88[ASN][1000 genomes]
rs2157719	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2383204	0.80[ASN][1000 genomes]
rs2811713	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs490005	0.90[ASN][1000 genomes]
rs496892	0.90[ASN][1000 genomes]
rs4977753	0.90[ASN][1000 genomes]
rs504318	0.90[ASN][1000 genomes]
rs518394	0.82[EUR][1000 genomes]
rs523096	0.82[EUR][1000 genomes]
rs543830	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs564398	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs567453	0.90[ASN][1000 genomes]
rs573687	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs597816	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs599452	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs613312	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs615552	0.81[EUR][1000 genomes]
rs634537	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs643319	0.90[ASN][1000 genomes]
rs6475604	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs679038	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7027048	0.80[ASN][1000 genomes]
rs7027950	0.80[ASN][1000 genomes]
rs7028570	0.80[ASN][1000 genomes]
rs7030641	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7035484	0.90[ASN][1000 genomes]
rs7044859	0.90[ASN][1000 genomes]
rs7049105	0.90[ASN][1000 genomes]
rs7865618	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs944799	0.80[ASN][1000 genomes]
rs944801	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529609	chr9:21708371-22537069	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv8426	chr9:21763810-22176200	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv1018514	chr9:21944275-22075326	Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv892746	chr9:21953137-22028801	Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv892747	chr9:21984661-22068646	Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	nsv531617	chr9:21985057-22809676	Genic enhancers Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:22009800-22030200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:22009800-22037000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr9:22010000-22029400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr9:22010000-22029800	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr9:22013800-22024400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr9:22017000-22027000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr9:22017800-22024000	Weak transcription	Dnd41	blood
8	chr9:22019800-22024400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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