Variant report

Variant	rs58187777
Chromosome Location	chr8:61832447-61832448
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CLVS1-1	chr8:61831540-61835815	NONHSAT126851

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10504321	0.83[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs12680914	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12680923	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12682244	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16926576	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16926582	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4123861	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4609230	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55792263	0.80[AFR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55832112	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57065489	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58610284	0.92[ASN][1000 genomes]
rs59503990	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61356857	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61525594	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72652548	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72652549	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72652550	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7819622	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv526196	chr8:61593569-61877623	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	esv1795586	chr8:61733174-61863906	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv429919	chr8:61771472-61979873	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	nsv890947	chr8:61815886-61882751	Active TSS Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv948922	chr8:61818964-62475097	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:61823000-61834800	Weak transcription	Pancreas	Pancrea
2	chr8:61825400-61833200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr8:61826000-61832800	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr8:61826000-61833000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr8:61826400-61833200	Weak transcription	Brain Anterior Caudate	brain
6	chr8:61826600-61835200	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr8:61827800-61834400	Weak transcription	Colonic Mucosa	Colon
8	chr8:61828400-61835600	Weak transcription	Spleen	Spleen
9	chr8:61829200-61832800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr8:61829600-61835600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr8:61829800-61835200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr8:61829800-61835400	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr8:61829800-61835400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr8:61829800-61835600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr8:61830400-61833800	Weak transcription	Fetal Thymus	thymus
16	chr8:61830400-61834800	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr8:61830400-61835400	Weak transcription	Primary hematopoietic stem cells	blood
18	chr8:61830400-61835400	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr8:61830600-61835000	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr8:61830600-61835400	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr8:61830600-61835600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr8:61830600-61836000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr8:61830800-61835200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr8:61830800-61836000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr8:61831000-61834800	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr8:61831000-61836000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr8:61831200-61833600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr8:61831200-61836000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr8:61831200-61836000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr8:61831600-61833000	Enhancers	Primary T helper cells fromperipheralblood	blood
31	chr8:61832000-61835600	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr8:61832200-61835200	Weak transcription	Primary B cells from cord blood	blood
33	chr8:61832400-61833600	Weak transcription	Primary T cells from cord blood	blood
34	chr8:61832400-61834000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr8:61832400-61834400	Weak transcription	Primary B cells from peripheral blood	blood
36	chr8:61832400-61838800	Weak transcription	HSMMtube	muscle

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