Variant report

Variant	rs58189621
Chromosome Location	chr4:7103641-7103642
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:7043790..7046279-chr4:7102506..7105292,2	K562	blood:
2	chr4:6783899..6786313-chr4:7103315..7105730,2	K562	blood:
3	chr4:7098558..7101540-chr4:7102623..7104219,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GRPEL1-1	chr4:7102967-7105112	ENSG00000245468

Variant related genes	Relation type
ENSG00000173011	Chromatin interaction
ENSG00000173013	Chromatin interaction
ENSG00000170871	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34033	chr4:6973270-7390621	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	esv2757919	chr4:6988148-7269901	Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	esv2759221	chr4:6988148-7269901	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
4	nsv428436	chr4:6988148-7269901	Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
5	nsv469847	chr4:7003525-7168441	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
6	nsv878531	chr4:7006541-7129556	Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
7	nsv878534	chr4:7084985-7121880	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv878535	chr4:7093834-7135912	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
9	nsv461191	chr4:7102597-7129001	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	nsv878536	chr4:7102597-7142868	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
11	nsv878537	chr4:7102597-7153642	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
12	nsv878538	chr4:7102597-7158467	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:7100600-7103800	Weak transcription	HSMMtube	muscle
2	chr4:7103000-7103800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
3	chr4:7103000-7104600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:7103000-7104600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr4:7103000-7104600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr4:7103200-7104000	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr4:7103200-7104000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr4:7103200-7104000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
9	chr4:7103200-7105400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
10	chr4:7103400-7103800	Active TSS	HUES64 Cell Line	embryonic stem cell
11	chr4:7103400-7103800	Active TSS	iPS-20b Cell Line	embryonic stem cell
12	chr4:7103400-7103800	Enhancers	Fetal Intestine Large	intestine
13	chr4:7103400-7104000	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr4:7103400-7104000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr4:7103400-7104000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr4:7103400-7104000	Enhancers	Ovary	ovary
17	chr4:7103400-7104200	Bivalent Enhancer	Fetal Thymus	thymus
18	chr4:7103400-7104600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr4:7103400-7104600	Enhancers	Spleen	Spleen
20	chr4:7103400-7105200	Active TSS	H9 Cell Line	embryonic stem cell
21	chr4:7103600-7103800	Flanking Active TSS	H1 Cell Line	embryonic stem cell
22	chr4:7103600-7103800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
23	chr4:7103600-7103800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
24	chr4:7103600-7103800	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr4:7103600-7103800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr4:7103600-7103800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr4:7103600-7103800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr4:7103600-7103800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr4:7103600-7103800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr4:7103600-7103800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr4:7103600-7103800	Enhancers	Adipose Nuclei	Adipose
32	chr4:7103600-7103800	Enhancers	Aorta	Aorta
33	chr4:7103600-7103800	Enhancers	Liver	Liver
34	chr4:7103600-7103800	Flanking Active TSS	Brain Angular Gyrus	brain
35	chr4:7103600-7103800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
36	chr4:7103600-7103800	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
37	chr4:7103600-7103800	Flanking Active TSS	Colonic Mucosa	Colon
38	chr4:7103600-7103800	Enhancers	Duodenum Smooth Muscle	Duodenum
39	chr4:7103600-7103800	Flanking Active TSS	Fetal Brain Female	brain
40	chr4:7103600-7103800	Flanking Active TSS	Fetal Intestine Small	intestine
41	chr4:7103600-7103800	Bivalent Enhancer	Placenta	Placenta
42	chr4:7103600-7103800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
43	chr4:7103600-7103800	Flanking Active TSS	Rectal Smooth Muscle	rectum
44	chr4:7103600-7103800	Enhancers	Small Intestine	intestine
45	chr4:7103600-7103800	Flanking Active TSS	Thymus	Thymus
46	chr4:7103600-7103800	Flanking Active TSS	HepG2	liver
47	chr4:7103600-7103800	Flanking Active TSS	HSMM	muscle
48	chr4:7103600-7103800	Enhancers	K562	blood
49	chr4:7103600-7103800	Enhancers	NH-A	brain
50	chr4:7103600-7103800	Enhancers	NHDF-Ad	bronchial

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