Variant report

Variant	rs58204164
Chromosome Location	chr6:128179958-128179959
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs73595717	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830799	chr6:128033100-128194511	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv1849854	chr6:128143774-128287313	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128134800-128180200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr6:128176200-128180000	Enhancers	Primary T cells from cord blood	blood
3	chr6:128176200-128181200	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr6:128176400-128181200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr6:128176600-128180400	Enhancers	Primary T killer memory cells from peripheral blood	blood
6	chr6:128176600-128180800	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr6:128176600-128181000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr6:128176600-128181600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr6:128176600-128181600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr6:128176600-128183600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr6:128177200-128181600	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr6:128178800-128190800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr6:128179000-128180000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr6:128179000-128180000	Weak transcription	Thymus	Thymus
15	chr6:128179000-128180200	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr6:128179000-128180400	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr6:128179200-128180000	Weak transcription	Fetal Thymus	thymus
18	chr6:128179200-128180200	Weak transcription	Brain Angular Gyrus	brain
19	chr6:128179200-128180200	Weak transcription	Brain Hippocampus Middle	brain
20	chr6:128179200-128190400	Weak transcription	Brain Cingulate Gyrus	brain
21	chr6:128179800-128180200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr6:128179800-128180600	Enhancers	Brain Substantia Nigra	brain

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