Variant report

Variant	rs58206342
Chromosome Location	chr9:98063373-98063374
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:98062934..98065072-chr9:98067930..98070513,2	K562	blood:
2	chr9:98062229..98064595-chr9:98064596..98066110,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10993494	0.86[ASN][1000 genomes]
rs10993506	0.94[ASN][1000 genomes]
rs59787074	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831657	chr9:97959274-98204769	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98050200-98067400	Weak transcription	A549	lung
2	chr9:98055000-98068600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:98055200-98065600	Weak transcription	Thymus	Thymus
4	chr9:98055400-98066000	Weak transcription	Fetal Muscle Leg	muscle
5	chr9:98059600-98067000	Weak transcription	GM12878-XiMat	blood
6	chr9:98059800-98064400	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr9:98059800-98068000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr9:98059800-98068600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr9:98060200-98067400	Weak transcription	HSMM	muscle
10	chr9:98060400-98075000	Weak transcription	NHEK	skin
11	chr9:98061000-98067200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr9:98061000-98068800	Weak transcription	Small Intestine	intestine
13	chr9:98061400-98064400	Weak transcription	Primary T cells from cord blood	blood
14	chr9:98061800-98067400	Weak transcription	Fetal Lung	lung
15	chr9:98063000-98063400	Enhancers	Fetal Stomach	stomach
16	chr9:98063000-98063400	Flanking Active TSS	NHLF	lung
17	chr9:98063000-98063400	Flanking Active TSS	Osteobl	bone
18	chr9:98063000-98063600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr9:98063000-98063600	Flanking Active TSS	Ovary	ovary
20	chr9:98063200-98063600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr9:98063200-98064000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr9:98063200-98065800	Weak transcription	Lung	lung
23	chr9:98063200-98068200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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