Variant report

Variant	rs58207753
Chromosome Location	chr12:47282128-47282129
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs60302941	1.00[AFR][1000 genomes]
rs74082905	1.00[AFR][1000 genomes]
rs74082910	1.00[AFR][1000 genomes]
rs74082913	1.00[AFR][1000 genomes]
rs74082924	1.00[AFR][1000 genomes]
rs74086125	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1845143	chr12:47051076-47431496	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:47279200-47286000	Weak transcription	Psoas Muscle	Psoas
2	chr12:47279400-47282200	Enhancers	Muscle Satellite Cultured Cells	--
3	chr12:47279600-47282200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr12:47279600-47282200	Enhancers	HSMM	muscle
5	chr12:47281000-47284800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr12:47281000-47285000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr12:47281000-47285000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr12:47281000-47286000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr12:47281000-47290800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr12:47281200-47284800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr12:47281200-47284800	Weak transcription	HSMMtube	muscle
12	chr12:47281200-47284800	Weak transcription	Osteobl	bone
13	chr12:47281600-47284800	Weak transcription	NHDF-Ad	bronchial
14	chr12:47282000-47282600	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
15	chr12:47282000-47284800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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