Variant report

Variant	rs58208771
Chromosome Location	chr4:21681879-21681880
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs13102531	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13125607	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1503988	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1503989	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs59790375	0.95[ASN][1000 genomes]
rs6822652	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73256510	0.95[ASN][1000 genomes]
rs73256511	0.95[ASN][1000 genomes]
rs73256512	0.95[ASN][1000 genomes]
rs7658813	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs978535	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs978536	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829880	chr4:21492426-21693816	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21681800-21693800	Weak transcription	Colon Smooth Muscle	Colon

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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