Variant report

Variant	rs58209882
Chromosome Location	chr14:40817683-40817684
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2179929	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56687263	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs58490156	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs59181681	1.00[AFR][1000 genomes]
rs61459210	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751272	chr14:40216880-40913230	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv901663	chr14:40640214-40879975	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1817307	chr14:40647649-40833306	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv901664	chr14:40663978-41432350	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1040019	chr14:40674730-40891003	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv542050	chr14:40674730-40891003	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv901666	chr14:40701679-40859517	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv901667	chr14:40701679-40863379	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1045746	chr14:40759826-40852546	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	esv3424823	chr14:40816251-40835900	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:40815400-40817800	Active TSS	HUES48 Cell Line	embryonic stem cell
2	chr14:40815400-40817800	Active TSS	iPS-15b Cell Line	embryonic stem cell
3	chr14:40815600-40817800	Active TSS	HUES6 Cell Line	embryonic stem cell
4	chr14:40815800-40817800	Active TSS	H1 Cell Line	embryonic stem cell
5	chr14:40815800-40817800	Active TSS	HUES64 Cell Line	embryonic stem cell
6	chr14:40816000-40817800	Active TSS	ES-I3 Cell Line	embryonic stem cell
7	chr14:40816600-40817800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr14:40816800-40817800	Active TSS	H9 Cell Line	embryonic stem cell
9	chr14:40816800-40817800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr14:40816800-40817800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr14:40816800-40817800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
12	chr14:40817000-40817800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr14:40817600-40817800	Active TSS	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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