Variant report

Variant	rs58221439
Chromosome Location	chr8:65194425-65194426
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11787111	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57278897	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60109366	1.00[ASN][1000 genomes]
rs6989276	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6994670	0.99[ASN][1000 genomes]
rs72652676	0.82[EUR][1000 genomes]
rs72652678	0.82[EUR][1000 genomes]
rs7822543	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948343	chr8:64804219-65328394	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv534001	chr8:64992196-65798776	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv890971	chr8:65028814-65242166	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:65186600-65194800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr8:65193600-65195800	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr8:65193600-65196200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr8:65193800-65195600	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr8:65193800-65196400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr8:65194200-65196400	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr8:65194400-65194800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
8	chr8:65194400-65195200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
9	chr8:65194400-65196400	Enhancers	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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