Variant report

Variant	rs58221836
Chromosome Location	chr17:16267029-16267030
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:16266815..16267728-chr17:16317761..16318908,3	MCF-7	breast:
2	chr17:16265967..16268292-chr17:16345607..16348010,2	K562	blood:
3	chr17:16265218..16268845-chr17:16343746..16347107,5	K562	blood:
4	chr17:16266744..16267680-chr17:16318361..16318899,2	K562	blood:
5	chr17:16265803..16268649-chr17:16283945..16285935,2	MCF-7	breast:
6	chr17:16265625..16269914-chr17:16283238..16286141,5	MCF-7	breast:
7	chr17:16266760..16267289-chr17:16356216..16356738,2	K562	blood:
8	chr17:16266880..16268158-chr17:16424116..16425459,6	K562	blood:

No data

Variant related genes	Relation type
ENSG00000175061	Chromatin interaction
ENSG00000170315	Chromatin interaction
ENSG00000266651	Chromatin interaction
ENSG00000187688	Chromatin interaction
ENSG00000265401	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2286666	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3095173	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3095175	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3112519	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs3112523	0.86[ASN][1000 genomes]
rs3112528	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934185	chr17:15552960-16551197	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	190 gene(s)	inside rSNPs	diseases
2	esv3330182	chr17:15652014-16569534	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
3	esv3446844	chr17:15654843-16572246	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
4	nsv1063459	chr17:15804228-16543593	Weak transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	164 gene(s)	inside rSNPs	diseases
5	nsv1063764	chr17:16171649-16662914	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	120 gene(s)	inside rSNPs	diseases
6	nsv1061463	chr17:16245878-16490691	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	99 gene(s)	inside rSNPs	diseases
7	nsv543216	chr17:16245878-16490691	Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	99 gene(s)	inside rSNPs	diseases
8	nsv827903	chr17:16251979-16283760	Enhancers Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
9	nsv1065254	chr17:16252880-16389930	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	92 gene(s)	inside rSNPs	diseases
10	nsv428668	chr17:16265210-16455285	Weak transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	89 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:16257200-16283800	Weak transcription	Right Atrium	heart
2	chr17:16266800-16267600	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr17:16266800-16267600	Enhancers	GM12878-XiMat	blood
4	chr17:16266800-16268400	Enhancers	Fetal Intestine Large	intestine
5	chr17:16266800-16268600	Enhancers	Brain Cingulate Gyrus	brain
6	chr17:16266800-16268800	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr17:16267000-16267400	Enhancers	Primary B cells from peripheral blood	blood
8	chr17:16267000-16267400	Enhancers	Fetal Thymus	thymus
9	chr17:16267000-16267600	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr17:16267000-16267600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr17:16267000-16267800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr17:16267000-16267800	Enhancers	Liver	Liver
13	chr17:16267000-16268000	Enhancers	Duodenum Mucosa	Duodenum
14	chr17:16267000-16268000	Enhancers	Hela-S3	cervix
15	chr17:16267000-16268400	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr17:16267000-16268400	Enhancers	Fetal Intestine Small	intestine
17	chr17:16267000-16268400	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr17:16267000-16268400	Enhancers	Stomach Mucosa	stomach
19	chr17:16267000-16268400	Enhancers	Stomach Smooth Muscle	stomach
20	chr17:16267000-16268600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr17:16267000-16268600	Enhancers	Brain Angular Gyrus	brain
22	chr17:16267000-16268600	Enhancers	Brain Anterior Caudate	brain
23	chr17:16267000-16268600	Enhancers	Brain Hippocampus Middle	brain
24	chr17:16267000-16268600	Enhancers	Brain Substantia Nigra	brain
25	chr17:16267000-16268600	Enhancers	HepG2	liver

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