Variant report

Variant	rs58234955
Chromosome Location	chr3:155380656-155380657
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:155379377..155381344-chr3:155382651..155384726,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs57856083	0.86[AFR][1000 genomes]
rs73874897	0.86[AFR][1000 genomes]
rs73876903	0.86[AFR][1000 genomes]
rs73876906	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009618	chr3:155370034-155492177	Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv967244	chr3:155376242-155382118	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155378600-155381200	Enhancers	A549	lung
2	chr3:155378800-155385400	Enhancers	Fetal Intestine Large	intestine
3	chr3:155379000-155382000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr3:155379400-155381400	Weak transcription	Fetal Lung	lung
5	chr3:155379400-155382000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr3:155379400-155382800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr3:155379400-155382800	Weak transcription	Pancreas	Pancrea
8	chr3:155379400-155383000	Weak transcription	Gastric	stomach
9	chr3:155379800-155381400	Weak transcription	Duodenum Mucosa	Duodenum
10	chr3:155379800-155383000	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr3:155380000-155381000	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr3:155380000-155381400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr3:155380000-155381600	Weak transcription	Small Intestine	intestine
14	chr3:155380000-155382800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr3:155380000-155382800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr3:155380000-155383000	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr3:155380000-155383000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr3:155380000-155383200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr3:155380200-155381200	Weak transcription	Fetal Intestine Small	intestine
20	chr3:155380200-155381200	Weak transcription	HepG2	liver
21	chr3:155380200-155381400	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr3:155380200-155381400	Weak transcription	Stomach Mucosa	stomach
23	chr3:155380200-155382400	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr3:155380200-155382800	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr3:155380400-155383400	Enhancers	Brain Germinal Matrix	brain

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