Variant report

Variant	rs582359
Chromosome Location	chr10:5929040-5929041
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr10:5928985-5929332	IMR90	lung:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:5904346..5907644-chr10:5928919..5931742,3	MCF-7	breast:
2	chr10:5725094..5729377-chr10:5927689..5933777,6	MCF-7	breast:
3	chr10:5853532..5857435-chr10:5928623..5934190,13	MCF-7	breast:
4	chr10:5852595..5861125-chr10:5921136..5936216,31	MCF-7	breast:
5	chr10:5853820..5856785-chr10:5927225..5934067,15	K562	blood:
6	chr10:5925580..5929335-chr10:5933926..5939138,5	K562	blood:
7	chr10:5853439..5857708-chr10:5926443..5936823,24	K562	blood:

No data

Variant related genes	Relation type
FBXO18	TF binding region
ENSG00000272764	Chromatin interaction
ENSG00000240180	Chromatin interaction
ENSG00000108021	Chromatin interaction
ENSG00000134452	Chromatin interaction
ENSG00000057608	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs2274029	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.87[MEX][hapmap];0.90[TSI][hapmap]
rs2320	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.97[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap]
rs2669122	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2669126	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4293039	0.84[CHB][hapmap];0.88[JPT][hapmap]
rs591510	0.96[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];0.98[GIH][hapmap];0.87[JPT][hapmap];0.87[MEX][hapmap];0.88[TSI][hapmap];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs591878	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs593610	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs595923	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];0.88[TSI][hapmap];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs598331	0.90[ASN][1000 genomes]
rs603780	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs607728	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs610093	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.86[MEX][hapmap];0.90[TSI][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs621628	0.98[ASN][1000 genomes]
rs622758	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs626344	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.94[JPT][hapmap];0.99[ASN][1000 genomes]
rs633797	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.82[MEX][hapmap];0.90[TSI][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs633928	0.99[ASN][1000 genomes]
rs633930	0.87[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.88[TSI][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs635532	0.96[ASN][1000 genomes]
rs636578	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.88[JPT][hapmap];0.97[ASN][1000 genomes]
rs647945	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs649537	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.94[JPT][hapmap];0.99[ASN][1000 genomes]
rs664603	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs668498	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.86[MEX][hapmap];0.88[TSI][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs670856	0.87[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs672126	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs680020	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.82[MEX][hapmap];0.90[TSI][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs685852	1.00[ASN][1000 genomes]
rs686854	0.91[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.88[TSI][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs688388	0.87[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.82[MEX][hapmap];0.85[TSI][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs792348	0.85[ASN][1000 genomes]
rs907687	0.84[ASW][hapmap];0.84[CHB][hapmap];0.88[JPT][hapmap];0.82[MEX][hapmap]
rs980230	0.84[ASW][hapmap];0.84[CHB][hapmap];0.88[JPT][hapmap];0.82[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv831775	chr10:5804335-6000849	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv5654	chr10:5868365-5930634	Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv825229	chr10:5886905-5967697	Enhancers Genic enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv466723	chr10:5920836-5930579	Strong transcription Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
8	nsv549905	chr10:5920836-5930579	Flanking Active TSS Genic enhancers Weak transcription Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
9	nsv466724	chr10:5920836-5938544	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases
10	nsv549906	chr10:5920836-5938544	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:5913000-5929800	Weak transcription	Fetal Heart	heart
2	chr10:5913000-5929800	Weak transcription	Psoas Muscle	Psoas
3	chr10:5914000-5929600	Weak transcription	NHLF	lung
4	chr10:5915600-5930000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr10:5915600-5930000	Weak transcription	HUVEC	blood vessel
6	chr10:5915800-5930000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr10:5915800-5930200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr10:5916200-5929400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
9	chr10:5916200-5929800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr10:5916200-5929800	Strong transcription	Fetal Intestine Large	intestine
11	chr10:5916400-5929200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
12	chr10:5916400-5929800	Strong transcription	Fetal Muscle Trunk	muscle
13	chr10:5916600-5929400	Strong transcription	HUES48 Cell Line	embryonic stem cell
14	chr10:5916600-5930600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr10:5916800-5930200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr10:5918000-5929800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr10:5918000-5930000	Strong transcription	HUES64 Cell Line	embryonic stem cell
18	chr10:5918200-5929200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr10:5918200-5929600	Strong transcription	H1 Cell Line	embryonic stem cell
20	chr10:5918200-5930200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr10:5919200-5930000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr10:5919600-5929800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr10:5920200-5929800	Weak transcription	Right Ventricle	heart
24	chr10:5920200-5930600	Weak transcription	Aorta	Aorta
25	chr10:5920400-5929800	Weak transcription	Colonic Mucosa	Colon
26	chr10:5920400-5930000	Weak transcription	Hela-S3	cervix
27	chr10:5923600-5929200	Strong transcription	Fetal Stomach	stomach
28	chr10:5923800-5929200	Strong transcription	Brain Inferior Temporal Lobe	brain
29	chr10:5923800-5929200	Strong transcription	Dnd41	blood
30	chr10:5923800-5929400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr10:5923800-5929800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
32	chr10:5923800-5929800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr10:5924000-5929200	Strong transcription	Fetal Lung	lung
34	chr10:5924000-5929400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr10:5924000-5929400	Strong transcription	Brain Hippocampus Middle	brain
36	chr10:5924000-5929400	Strong transcription	Placenta	Placenta
37	chr10:5924000-5929800	Strong transcription	HMEC	breast
38	chr10:5924200-5930000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr10:5924200-5930000	Strong transcription	Primary T cells from cord blood	blood
40	chr10:5924400-5929200	Strong transcription	Brain Anterior Caudate	brain
41	chr10:5924400-5930400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr10:5926000-5930000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr10:5926200-5929200	Weak transcription	Primary T helper cells fromperipheralblood	blood
44	chr10:5926200-5929800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr10:5926200-5930000	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr10:5926400-5929600	Weak transcription	Fetal Brain Male	brain
47	chr10:5926400-5929600	Weak transcription	Gastric	stomach
48	chr10:5926400-5929600	Weak transcription	Left Ventricle	heart
49	chr10:5926400-5929800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr10:5926400-5929800	Weak transcription	Primary T helper cells PMA-I stimulated	--

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