Variant report

Variant	rs58236040
Chromosome Location	chr19:38517387-38517388
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12973690	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12977585	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12980972	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12980973	0.91[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs34417240	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs34846275	0.91[AMR][1000 genomes]
rs34900817	0.84[ASN][1000 genomes]
rs34943246	0.81[ASN][1000 genomes]
rs35445607	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs36106417	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs61355521	0.84[ASN][1000 genomes]
rs6508757	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7508583	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8106091	0.84[ASN][1000 genomes]
rs8110656	0.96[ASN][1000 genomes]
rs9304573	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949296	chr19:38034722-38763140	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv911656	chr19:38505037-38539988	Genic enhancers Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1060359	chr19:38512719-38552438	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:38495400-38522800	Weak transcription	Aorta	Aorta
2	chr19:38495400-38526400	Weak transcription	Ovary	ovary
3	chr19:38496200-38521400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr19:38496400-38521400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr19:38496800-38520600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr19:38497400-38520600	Weak transcription	Primary T cells from cord blood	blood
7	chr19:38500600-38524200	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr19:38501000-38521400	Weak transcription	Thymus	Thymus
9	chr19:38502400-38523000	Weak transcription	Liver	Liver
10	chr19:38503800-38523800	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr19:38505200-38518600	Weak transcription	Fetal Stomach	stomach
12	chr19:38506600-38526200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr19:38507400-38517800	Weak transcription	GM12878-XiMat	blood
14	chr19:38508600-38537000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr19:38510000-38519600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr19:38510000-38524200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr19:38511400-38517400	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr19:38512200-38521600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr19:38512600-38517400	Genic enhancers	Primary B cells from peripheral blood	blood
20	chr19:38513600-38517400	Enhancers	Brain Hippocampus Middle	brain
21	chr19:38513800-38524000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr19:38514000-38520400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr19:38514000-38521400	Weak transcription	Esophagus	oesophagus
24	chr19:38514200-38521400	Weak transcription	Gastric	stomach
25	chr19:38514200-38523200	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr19:38514200-38523200	Weak transcription	Monocytes-CD14+_RO01746	blood
27	chr19:38514200-38523600	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr19:38514400-38519800	Weak transcription	HSMM	muscle
29	chr19:38514400-38519800	Weak transcription	NHDF-Ad	bronchial
30	chr19:38514400-38524200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr19:38514600-38517400	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr19:38514600-38519600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr19:38514600-38521400	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr19:38514600-38521600	Weak transcription	NHLF	lung
35	chr19:38514600-38523800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr19:38514600-38524200	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr19:38514600-38524200	Weak transcription	Right Atrium	heart
38	chr19:38514600-38530200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr19:38514800-38519000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr19:38514800-38519400	Weak transcription	Osteobl	bone
41	chr19:38514800-38519600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr19:38514800-38524000	Weak transcription	Adipose Nuclei	Adipose
43	chr19:38514800-38526400	Weak transcription	Left Ventricle	heart
44	chr19:38514800-38537000	Weak transcription	Colonic Mucosa	Colon
45	chr19:38515000-38518200	Weak transcription	Small Intestine	intestine
46	chr19:38515000-38518600	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr19:38515000-38521400	Weak transcription	HSMMtube	muscle
48	chr19:38515000-38522600	Weak transcription	Fetal Heart	heart
49	chr19:38515000-38523600	Weak transcription	Fetal Thymus	thymus
50	chr19:38515000-38524600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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