Variant report

Variant	rs58244889
Chromosome Location	chr10:6644504-6644505
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11258749	1.00[AMR][1000 genomes]
rs11258769	1.00[AMR][1000 genomes]
rs11815181	1.00[AMR][1000 genomes]
rs12246604	1.00[AMR][1000 genomes]
rs12247216	1.00[AMR][1000 genomes]
rs12254073	1.00[AMR][1000 genomes]
rs12259224	1.00[AMR][1000 genomes]
rs12259637	1.00[AMR][1000 genomes]
rs12267924	1.00[AMR][1000 genomes]
rs12268204	1.00[AMR][1000 genomes]
rs12761830	1.00[AMR][1000 genomes]
rs7084692	1.00[AMR][1000 genomes]
rs74113516	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053440	chr10:6354798-6669469	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
2	nsv1047309	chr10:6495583-6714060	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6626200-6645200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr10:6628000-6644600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr10:6628800-6644600	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr10:6631200-6644800	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr10:6632000-6645000	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr10:6632000-6645200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr10:6633400-6645000	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr10:6636600-6645400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr10:6636600-6648200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr10:6636800-6644600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr10:6638000-6644600	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr10:6640800-6644600	Enhancers	Primary T cells fromperipheralblood	blood
13	chr10:6641600-6644600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
14	chr10:6642000-6644600	Enhancers	Fetal Thymus	thymus
15	chr10:6642400-6650400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr10:6642600-6644600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr10:6642600-6645000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
18	chr10:6642800-6644600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr10:6642800-6644800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr10:6642800-6644800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
21	chr10:6642800-6645000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
22	chr10:6642800-6645000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
23	chr10:6642800-6651600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr10:6643000-6644800	Enhancers	Primary T killer memory cells from peripheral blood	blood
25	chr10:6643200-6645200	Enhancers	Primary T cells from cord blood	blood
26	chr10:6643400-6644800	Enhancers	Brain Substantia Nigra	brain
27	chr10:6643400-6647000	Enhancers	Fetal Muscle Leg	muscle
28	chr10:6643600-6645000	Enhancers	Brain Cingulate Gyrus	brain
29	chr10:6643600-6645200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr10:6643600-6645400	Enhancers	Brain Inferior Temporal Lobe	brain
31	chr10:6643600-6646600	Enhancers	Brain Hippocampus Middle	brain
32	chr10:6643800-6648800	Weak transcription	Thymus	Thymus
33	chr10:6643800-6649000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr10:6644200-6645200	Genic enhancers	Primary T helper cells PMA-I stimulated	--
35	chr10:6644200-6645200	Weak transcription	Brain Angular Gyrus	brain
36	chr10:6644400-6644600	Bivalent Enhancer	HSMMtube	muscle
37	chr10:6644400-6645400	Weak transcription	Brain Anterior Caudate	brain
38	chr10:6644400-6646600	Enhancers	iPS-15b Cell Line	embryonic stem cell
39	chr10:6644400-6649000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr10:6644400-6650400	Weak transcription	Primary hematopoietic stem cells	blood

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