Variant report

Variant	rs58251881
Chromosome Location	chr9:79464301-79464302
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:79463198..79464986-chr9:79466037..79468315,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs56326568	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57802610	1.00[AMR][1000 genomes]
rs60257540	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60389933	1.00[AMR][1000 genomes]
rs60680970	1.00[AMR][1000 genomes]
rs73653223	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73653227	1.00[AMR][1000 genomes]
rs7865703	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869152	chr9:78742197-79583399	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1040363	chr9:79246366-79711737	Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv2758190	chr9:79365865-79673907	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv2759697	chr9:79365865-79673907	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1054381	chr9:79450930-79500447	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:79450000-79478400	Weak transcription	Brain Angular Gyrus	brain
2	chr9:79451200-79467000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr9:79451200-79467000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr9:79451400-79478800	Weak transcription	Brain Anterior Caudate	brain
5	chr9:79451600-79466800	Weak transcription	Brain Substantia Nigra	brain
6	chr9:79451600-79476000	Weak transcription	Brain Hippocampus Middle	brain
7	chr9:79451600-79480400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr9:79451800-79467200	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr9:79452000-79477800	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr9:79454800-79465000	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr9:79458800-79468600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr9:79459000-79468800	Strong transcription	HSMM	muscle
13	chr9:79459200-79465600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr9:79459800-79465600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr9:79461200-79465600	Weak transcription	Fetal Stomach	stomach
16	chr9:79461600-79481600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr9:79461800-79474200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr9:79462000-79465600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr9:79462200-79470600	Weak transcription	Rectal Smooth Muscle	rectum
20	chr9:79463400-79465600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr9:79463400-79465600	Strong transcription	HSMMtube	muscle
22	chr9:79463400-79467200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr9:79463600-79465200	Strong transcription	Stomach Smooth Muscle	stomach
24	chr9:79463600-79465400	Strong transcription	Aorta	Aorta
25	chr9:79463800-79464400	Strong transcription	Colon Smooth Muscle	Colon

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