Variant report

Variant	rs58255898
Chromosome Location	chr3:98429517-98429518
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs57266345	0.82[AFR][1000 genomes]
rs59684850	0.86[AFR][1000 genomes]
rs72930915	1.00[AMR][1000 genomes]
rs72930941	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72930963	0.86[AFR][1000 genomes]
rs72930970	0.86[AFR][1000 genomes]
rs72934618	0.82[AFR][1000 genomes]
rs72936606	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3390386	chr3:98174549-98579953	Genic enhancers Strong transcription Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv591065	chr3:98204198-98766326	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv524042	chr3:98317836-98436188	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1003922	chr3:98410967-98453602	Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv536662	chr3:98410967-98453602	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1007140	chr3:98421229-99202458	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
7	nsv536663	chr3:98421229-99202458	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:98424600-98430200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr3:98425000-98431600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr3:98425600-98438600	Weak transcription	Aorta	Aorta
4	chr3:98427200-98430200	Enhancers	Fetal Muscle Leg	muscle
5	chr3:98427400-98429600	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr3:98427400-98430400	Enhancers	Fetal Stomach	stomach
7	chr3:98427400-98432800	Enhancers	Placenta	Placenta
8	chr3:98427600-98429600	Enhancers	Fetal Kidney	kidney
9	chr3:98428400-98430000	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr3:98428600-98429600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr3:98428600-98429800	Enhancers	Adipose Nuclei	Adipose
12	chr3:98428800-98429600	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr3:98428800-98429800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr3:98428800-98432600	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr3:98428800-98432800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr3:98429000-98429600	Enhancers	Thymus	Thymus
17	chr3:98429000-98430000	Weak transcription	Pancreas	Pancrea
18	chr3:98429000-98432600	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr3:98429000-98432600	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr3:98429000-98432800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr3:98429400-98430400	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr3:98429400-98432800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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