Variant report

Variant	rs58256720
Chromosome Location	chr2:101320159-101320160
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10197594	0.92[ASN][1000 genomes]
rs11901892	1.00[ASN][1000 genomes]
rs34127796	0.92[ASN][1000 genomes]
rs6708355	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916792	chr2:101021066-101525200	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv582532	chr2:101029002-101531943	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv834314	chr2:101210940-101410477	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv1002372	chr2:101312468-101335019	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:101319600-101320200	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr2:101319800-101320200	Enhancers	Colon Smooth Muscle	Colon
3	chr2:101319800-101320400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr2:101319800-101320600	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr2:101319800-101320600	Enhancers	Rectal Smooth Muscle	rectum
6	chr2:101319800-101320800	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr2:101319800-101323600	Enhancers	Primary T cells from cord blood	blood
8	chr2:101320000-101320400	Enhancers	Adipose Nuclei	Adipose
9	chr2:101320000-101320600	Enhancers	H1 Cell Line	embryonic stem cell
10	chr2:101320000-101320800	Enhancers	Stomach Smooth Muscle	stomach
11	chr2:101320000-101321000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr2:101320000-101322800	Weak transcription	Fetal Brain Male	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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