Variant report

Variant	rs58265945
Chromosome Location	chr7:97851252-97851253
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:97846624..97850033-chr7:97850682..97852457,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000205356	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs55674787	1.00[AFR][1000 genomes]
rs73710341	0.83[AFR][1000 genomes]
rs73710379	0.83[AFR][1000 genomes]
rs73710383	0.83[AFR][1000 genomes]
rs73710392	0.83[AFR][1000 genomes]
rs73710400	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031371	chr7:97312452-98070538	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv3500384	chr7:97527787-98015382	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
3	esv3500386	chr7:97527787-98015382	Bivalent Enhancer Flanking Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
4	nsv1017481	chr7:97597641-98041043	Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
5	nsv539031	chr7:97597641-98041043	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
6	nsv1019531	chr7:97653880-98034129	Weak transcription Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
7	nsv539032	chr7:97653880-98034129	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
8	esv1816676	chr7:97676259-97868033	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv831066	chr7:97726879-97890550	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
10	nsv1033029	chr7:97773232-98017992	Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
11	nsv539033	chr7:97773232-98017992	Genic enhancers Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
12	nsv888760	chr7:97816327-97965016	Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
13	nsv888762	chr7:97829492-97853184	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
14	nsv888763	chr7:97829492-97866291	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
15	nsv888765	chr7:97834386-97853184	Bivalent Enhancer Enhancers Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
16	esv1812914	chr7:97846435-97860164	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
17	esv1849580	chr7:97846435-97860164	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
18	esv1845627	chr7:97851109-97860507	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:97836800-97857200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr7:97840400-97852800	Weak transcription	Brain Angular Gyrus	brain
3	chr7:97841000-97858600	Weak transcription	Psoas Muscle	Psoas
4	chr7:97841200-97852200	Weak transcription	A549	lung
5	chr7:97841200-97867800	Weak transcription	HUVEC	blood vessel
6	chr7:97841200-97880200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr7:97841400-97858600	Weak transcription	NH-A	brain
8	chr7:97841400-97866200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr7:97841400-97879400	Weak transcription	Fetal Brain Male	brain
10	chr7:97841400-97880200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr7:97841600-97853800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr7:97841800-97867400	Weak transcription	Rectal Smooth Muscle	rectum
13	chr7:97842200-97868400	Weak transcription	Colon Smooth Muscle	Colon
14	chr7:97843400-97855000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr7:97843800-97857000	Weak transcription	Right Atrium	heart
16	chr7:97845200-97877400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr7:97846800-97856400	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr7:97848000-97852800	Weak transcription	HepG2	liver
19	chr7:97848000-97857600	Weak transcription	Stomach Mucosa	stomach
20	chr7:97848000-97877600	Weak transcription	Primary hematopoietic stem cells	blood
21	chr7:97848000-97880600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr7:97848600-97873200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr7:97848800-97855200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr7:97849000-97864600	Strong transcription	Primary T helper cells fromperipheralblood	blood
25	chr7:97849200-97857800	Strong transcription	Fetal Muscle Leg	muscle
26	chr7:97849400-97863400	Strong transcription	Primary T helper cells PMA-I stimulated	--
27	chr7:97849800-97858000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr7:97850000-97871800	Strong transcription	Primary neutrophils fromperipheralblood	blood
29	chr7:97850000-97878000	Strong transcription	Fetal Stomach	stomach
30	chr7:97850200-97851800	Strong transcription	Primary T cells from cord blood	blood
31	chr7:97850200-97858200	Strong transcription	Liver	Liver
32	chr7:97850200-97874400	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr7:97850200-97875400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
34	chr7:97850400-97872800	Strong transcription	Primary T cells fromperipheralblood	blood
35	chr7:97850400-97878600	Weak transcription	GM12878-XiMat	blood
36	chr7:97850600-97851600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr7:97850600-97851800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr7:97850600-97851800	Strong transcription	Muscle Satellite Cultured Cells	--
39	chr7:97850600-97851800	Strong transcription	Duodenum Smooth Muscle	Duodenum
40	chr7:97850600-97852200	Strong transcription	Primary T helper naive cells from peripheral blood	blood
41	chr7:97850600-97852200	Strong transcription	Cortex derived primary cultured neurospheres	brain
42	chr7:97850600-97852600	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr7:97850600-97853200	Strong transcription	Stomach Smooth Muscle	stomach
44	chr7:97850600-97855400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr7:97850600-97855600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr7:97850600-97856200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr7:97850600-97856200	Strong transcription	Brain Germinal Matrix	brain
48	chr7:97850600-97864200	Strong transcription	Primary monocytes fromperipheralblood	blood
49	chr7:97850600-97872800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr7:97850600-97874400	Strong transcription	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links