Variant report

Variant	rs58268854
Chromosome Location	chr9:137035288-137035289
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:137034000..137036180-chr9:137308758..137311375,2	MCF-7	breast:
2	chr9:137034179..137042512-chr9:137212832..137221430,18	MCF-7	breast:
3	chr9:137035235..137037938-chr9:137322996..137325840,2	MCF-7	breast:
4	chr9:137034338..137036376-chr9:137110076..137112116,2	MCF-7	breast:
5	chr9:137028423..137041755-chr9:137210581..137221866,35	MCF-7	breast:
6	chr9:137034875..137036888-chr9:137245950..137248202,2	MCF-7	breast:
7	chr9:137028457..137030780-chr9:137033087..137036645,3	MCF-7	breast:
8	chr9:137034988..137036637-chr9:137333692..137335495,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000186350	Chromatin interaction
ENSG00000221676	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11556388	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11556389	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28377003	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28417688	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28490952	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28514622	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28537824	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28586903	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28654852	0.86[AFR][1000 genomes]
rs28670763	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28696205	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894138	chr9:136839840-137093168	Strong transcription Genic enhancers Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv1048571	chr9:136872166-137265444	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv894148	chr9:136874066-137093168	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv894151	chr9:136887757-137397609	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
5	nsv894155	chr9:136969689-137364866	Active TSS Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
6	esv1793302	chr9:136990615-137390602	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:137030800-137035600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr9:137030800-137036000	Weak transcription	Fetal Kidney	kidney
3	chr9:137030800-137036200	Weak transcription	Right Atrium	heart
4	chr9:137030800-137040000	Weak transcription	Small Intestine	intestine
5	chr9:137031000-137035800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr9:137031000-137036000	Weak transcription	Primary hematopoietic stem cells	blood
7	chr9:137031000-137036000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr9:137031000-137036200	Weak transcription	NHDF-Ad	bronchial
9	chr9:137031000-137037400	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr9:137031000-137040200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr9:137031200-137035400	Weak transcription	Ovary	ovary
12	chr9:137031200-137035800	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr9:137031200-137035800	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr9:137031200-137036000	Weak transcription	Primary B cells from cord blood	blood
15	chr9:137031200-137036000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr9:137031200-137036000	Weak transcription	Right Ventricle	heart
17	chr9:137031200-137036200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr9:137031200-137036200	Weak transcription	Colon Smooth Muscle	Colon
19	chr9:137031200-137039800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr9:137031200-137040600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr9:137031400-137035800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr9:137031400-137035800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr9:137031400-137035800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr9:137031400-137036200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr9:137031400-137036200	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr9:137031400-137036200	Weak transcription	HMEC	breast
27	chr9:137031400-137037000	Weak transcription	Brain Cingulate Gyrus	brain
28	chr9:137031400-137037400	Weak transcription	Lung	lung
29	chr9:137031800-137035800	Weak transcription	Pancreas	Pancrea
30	chr9:137031800-137036000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr9:137031800-137036200	Weak transcription	Dnd41	blood
32	chr9:137031800-137037000	Weak transcription	Esophagus	oesophagus
33	chr9:137032400-137036000	Weak transcription	Stomach Smooth Muscle	stomach
34	chr9:137032600-137038200	Enhancers	Fetal Intestine Large	intestine
35	chr9:137032800-137036800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr9:137033000-137036000	Weak transcription	NHLF	lung
37	chr9:137033200-137035600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr9:137033200-137036200	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr9:137033200-137036200	Weak transcription	Osteobl	bone
40	chr9:137033200-137036800	Weak transcription	HSMMtube	muscle
41	chr9:137033400-137035800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr9:137033800-137038000	Enhancers	Liver	Liver
43	chr9:137034200-137035400	Weak transcription	Fetal Muscle Leg	muscle
44	chr9:137034200-137036000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr9:137034200-137036000	Weak transcription	Fetal Stomach	stomach
46	chr9:137034200-137038200	Enhancers	Fetal Intestine Small	intestine
47	chr9:137034400-137036000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr9:137034400-137037200	Flanking Active TSS	HepG2	liver
49	chr9:137034400-137038000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr9:137034600-137035600	Flanking Active TSS	Duodenum Mucosa	Duodenum

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