Variant report

Variant	rs58269936
Chromosome Location	chr4:22392940-22392941
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:22386027..22387843-chr4:22392194..22394951,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1500464	0.80[EUR][1000 genomes]
rs28759515	0.88[ASN][1000 genomes]
rs28841331	0.84[EUR][1000 genomes]
rs57887864	0.88[ASN][1000 genomes]
rs6855444	1.00[ASN][1000 genomes]
rs73110181	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9993654	0.88[ASN][1000 genomes]
rs9993802	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv428756	chr4:22239826-22406106	Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3349061	chr4:22379581-22887563	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:22368800-22418600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:22371600-22449800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr4:22372000-22400400	Weak transcription	Gastric	stomach
4	chr4:22382600-22409600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr4:22383200-22438000	Weak transcription	Lung	lung
6	chr4:22383600-22404200	Weak transcription	Fetal Kidney	kidney
7	chr4:22383600-22442800	Weak transcription	A549	lung
8	chr4:22384200-22400400	Weak transcription	Ovary	ovary
9	chr4:22384200-22401000	Weak transcription	Small Intestine	intestine
10	chr4:22384200-22413000	Weak transcription	Fetal Heart	heart
11	chr4:22384600-22393000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr4:22385400-22430400	Weak transcription	Psoas Muscle	Psoas
13	chr4:22386000-22446600	Weak transcription	Fetal Thymus	thymus
14	chr4:22386600-22394400	Strong transcription	Liver	Liver
15	chr4:22386600-22394600	Strong transcription	Fetal Intestine Large	intestine
16	chr4:22387400-22397800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr4:22387800-22397800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr4:22388000-22393000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr4:22388000-22393000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr4:22388000-22399200	Weak transcription	Fetal Brain Female	brain
21	chr4:22388000-22411400	Weak transcription	NHDF-Ad	bronchial
22	chr4:22388000-22416600	Weak transcription	NHLF	lung
23	chr4:22388200-22393000	Weak transcription	Osteobl	bone
24	chr4:22388200-22393200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr4:22388200-22432400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr4:22388200-22442800	Weak transcription	Brain Germinal Matrix	brain
27	chr4:22388400-22417800	Weak transcription	HUVEC	blood vessel
28	chr4:22388400-22473600	Weak transcription	Rectal Smooth Muscle	rectum
29	chr4:22388800-22469600	Weak transcription	Colonic Mucosa	Colon
30	chr4:22389200-22402400	Weak transcription	Esophagus	oesophagus
31	chr4:22389200-22473600	Weak transcription	Fetal Brain Male	brain
32	chr4:22390200-22393000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr4:22390200-22394000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr4:22390200-22404800	Weak transcription	Pancreas	Pancrea
35	chr4:22390200-22414800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr4:22390400-22393400	Weak transcription	Brain Hippocampus Middle	brain
37	chr4:22390400-22398200	Weak transcription	Left Ventricle	heart
38	chr4:22390400-22399400	Weak transcription	Adipose Nuclei	Adipose
39	chr4:22390400-22400400	Weak transcription	Colon Smooth Muscle	Colon
40	chr4:22390400-22402000	Weak transcription	Right Ventricle	heart
41	chr4:22390600-22393000	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr4:22390600-22393400	Weak transcription	HMEC	breast
43	chr4:22390600-22393800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr4:22390600-22397200	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr4:22390600-22399000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
46	chr4:22390600-22399000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr4:22390600-22399200	Weak transcription	Primary hematopoietic stem cells	blood
48	chr4:22390600-22399600	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr4:22390600-22400400	Weak transcription	Aorta	Aorta
50	chr4:22390600-22400400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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