Variant report

Variant	rs582739
Chromosome Location	chr1:103300319-103300320
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs2615979	1.00[AFR][1000 genomes]
rs2615995	0.83[AFR][1000 genomes]
rs2616004	1.00[AFR][1000 genomes]
rs2708393	1.00[AFR][1000 genomes]
rs2708394	1.00[AFR][1000 genomes]
rs2783563	0.83[AFR][1000 genomes]
rs2783568	0.83[AFR][1000 genomes]
rs2783571	0.83[AFR][1000 genomes]
rs566963	1.00[AFR][1000 genomes]
rs584056	1.00[AFR][1000 genomes]
rs6674525	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830882	chr1:103192683-103355802	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:103299400-103301000	Weak transcription	Placenta	Placenta
2	chr1:103299400-103302800	Weak transcription	Hela-S3	cervix
3	chr1:103299600-103303600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:103300000-103301400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr1:103300200-103300600	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr1:103300200-103301000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr1:103300200-103301200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr1:103300200-103301200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr1:103300200-103301400	Enhancers	NH-A	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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