Variant report

Variant	rs58274262
Chromosome Location	chr1:112972164-112972165
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:112970749..112973658-chr1:113006314..113008591,2	K562	blood:
2	chr1:112970426..112972639-chr1:113007382..113009000,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs55831209	0.89[AFR][1000 genomes]
rs55850255	1.00[AFR][1000 genomes]
rs58190287	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv13370	chr1:112693290-113246263	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv1002971	chr1:112924725-113740584	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	166 gene(s)	inside rSNPs	diseases
3	nsv535059	chr1:112924725-113740584	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	166 gene(s)	inside rSNPs	diseases
4	nsv831081	chr1:112934920-113122640	Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	esv1850997	chr1:112944472-112993754	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:112942400-112988200	Weak transcription	Small Intestine	intestine
2	chr1:112947200-112981000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr1:112952400-112990600	Weak transcription	Esophagus	oesophagus
4	chr1:112952600-112981400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr1:112957400-112986600	Weak transcription	NHLF	lung
6	chr1:112957600-112997600	Weak transcription	Brain Anterior Caudate	brain
7	chr1:112958600-112979000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr1:112959600-112973200	Weak transcription	Lung	lung
9	chr1:112959600-112991600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr1:112959800-112973400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr1:112959800-112992800	Weak transcription	Fetal Muscle Trunk	muscle
12	chr1:112960000-112972200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr1:112960000-112972800	Weak transcription	Left Ventricle	heart
14	chr1:112960000-112973200	Weak transcription	Ovary	ovary
15	chr1:112960000-112974200	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr1:112960000-112980800	Weak transcription	Colon Smooth Muscle	Colon
17	chr1:112960000-112981600	Weak transcription	Liver	Liver
18	chr1:112960000-112995200	Weak transcription	Stomach Smooth Muscle	stomach
19	chr1:112960000-112996800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr1:112960200-112978200	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr1:112960200-112979000	Weak transcription	GM12878-XiMat	blood
22	chr1:112960200-112981200	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr1:112960200-112991600	Weak transcription	Hela-S3	cervix
24	chr1:112960400-112991400	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr1:112961200-112995600	Weak transcription	Brain Cingulate Gyrus	brain
26	chr1:112961400-112979000	Weak transcription	Brain Angular Gyrus	brain
27	chr1:112961400-112980600	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr1:112961600-112981200	Weak transcription	Fetal Brain Female	brain
29	chr1:112961800-112986800	Weak transcription	HMEC	breast
30	chr1:112962000-112979600	Weak transcription	Fetal Kidney	kidney
31	chr1:112962000-112990800	Weak transcription	Fetal Brain Male	brain
32	chr1:112962200-112976200	Weak transcription	Brain Germinal Matrix	brain
33	chr1:112962600-112990400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr1:112962600-112991600	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr1:112964000-112982200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr1:112964200-112974200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr1:112965600-112978800	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr1:112965800-112975400	Weak transcription	NH-A	brain
39	chr1:112965800-112980400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr1:112965800-112983200	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr1:112965800-112986400	Weak transcription	NHDF-Ad	bronchial
42	chr1:112965800-112996200	Weak transcription	Placenta	Placenta
43	chr1:112967000-112991600	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr1:112967200-112972200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr1:112967400-112976600	Weak transcription	Osteobl	bone
46	chr1:112967800-112982200	Weak transcription	HSMMtube	muscle
47	chr1:112968000-112972200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr1:112968200-112979000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr1:112968400-112978800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr1:112968600-112972800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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