Variant report

Variant	rs58284588
Chromosome Location	chr3:111359366-111359367
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs73852846	1.00[AFR][1000 genomes]
rs73852852	1.00[AFR][1000 genomes]
rs73852865	1.00[AFR][1000 genomes]
rs73852872	1.00[AFR][1000 genomes]
rs73852874	1.00[AFR][1000 genomes]
rs73852875	1.00[AFR][1000 genomes]
rs73855604	0.87[AFR][1000 genomes]
rs73855616	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv997756	chr3:111226058-111376585	Active TSS Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111347000-111367200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr3:111347600-111367800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr3:111351800-111360200	Strong transcription	Primary T cells from cord blood	blood
4	chr3:111354800-111359600	Strong transcription	Primary T cells fromperipheralblood	blood
5	chr3:111356200-111359800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr3:111356600-111359400	Strong transcription	Primary B cells from peripheral blood	blood
7	chr3:111357000-111368800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr3:111358400-111366800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr3:111358400-111369400	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr3:111358600-111367000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr3:111358800-111361200	Weak transcription	Fetal Thymus	thymus
12	chr3:111358800-111365600	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr3:111358800-111367000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr3:111358800-111368600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr3:111358800-111368600	Weak transcription	Thymus	Thymus
16	chr3:111359000-111366000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr3:111359000-111366200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr3:111359000-111368200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr3:111359200-111364600	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr3:111359200-111368400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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