Variant report

Variant	rs58284799
Chromosome Location	chr21:39912560-39912561
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11088433	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11088434	0.94[ASN][1000 genomes]
rs2836478	0.84[ASN][1000 genomes]
rs3787919	0.87[ASN][1000 genomes]
rs61246921	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3455210	chr21:39911274-39917321	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv3455214	chr21:39911387-39917206	Weak transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3455211	chr21:39911422-39917196	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3455213	chr21:39911463-39917193	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3455212	chr21:39911580-39917084	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3455215	chr21:39911594-39917083	Weak transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:39911200-39912600	Weak transcription	Aorta	Aorta
2	chr21:39911200-39935200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr21:39912200-39913000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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