Variant report

Variant	rs58285696
Chromosome Location	chr1:94455578-94455579
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:94455167..94457545-chr1:94460520..94463726,3	MCF-7	breast:
2	chr1:94454284..94456016-chr1:94463855..94465619,2	MCF-7	breast:
3	chr1:94448780..94451908-chr1:94453061..94456181,3	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs6669651	1.00[ASN][1000 genomes]
rs6677399	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516137	chr1:94404238-94504545	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94445800-94457200	Weak transcription	Right Atrium	heart
2	chr1:94446200-94463400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:94452400-94463800	Enhancers	HMEC	breast
4	chr1:94452800-94456000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr1:94452800-94456200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:94452800-94456200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr1:94452800-94462400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr1:94452800-94464000	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr1:94453000-94455800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr1:94453000-94456200	Enhancers	HSMM	muscle
11	chr1:94453200-94455800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr1:94453200-94456000	Enhancers	Placenta	Placenta
13	chr1:94453400-94456200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr1:94453600-94456000	Enhancers	HSMMtube	muscle
15	chr1:94453600-94457800	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr1:94453800-94455600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr1:94453800-94455800	Enhancers	Esophagus	oesophagus
18	chr1:94453800-94456000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr1:94454000-94456000	Enhancers	NHDF-Ad	bronchial
20	chr1:94454200-94456000	Enhancers	NH-A	brain
21	chr1:94454200-94456200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
22	chr1:94454400-94456000	Enhancers	Primary B cells from cord blood	blood
23	chr1:94454400-94457000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
24	chr1:94454600-94455800	Bivalent Enhancer	Fetal Muscle Leg	muscle
25	chr1:94454600-94455800	Enhancers	Ovary	ovary
26	chr1:94454600-94456000	Enhancers	Fetal Muscle Trunk	muscle
27	chr1:94454600-94456200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
28	chr1:94454800-94457800	Weak transcription	Liver	Liver
29	chr1:94455000-94455800	Enhancers	Pancreas	Pancrea
30	chr1:94455200-94455800	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
31	chr1:94455200-94456000	Enhancers	NHEK	skin
32	chr1:94455400-94456200	Enhancers	Osteobl	bone
33	chr1:94455400-94459200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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