Variant report

Variant	rs58285784
Chromosome Location	chr5:61250124-61250125
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12654555	0.81[EUR][1000 genomes]
rs1348703	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16897447	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16897459	0.81[EUR][1000 genomes]
rs58182565	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020693	chr5:61098865-61357032	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv881723	chr5:61183375-61311715	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:61244600-61253000	Weak transcription	Pancreas	Pancrea
2	chr5:61249200-61250800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:61249600-61250200	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr5:61249600-61250400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr5:61249600-61250400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr5:61249600-61250600	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr5:61249600-61250600	Enhancers	NHEK	skin
8	chr5:61249800-61250200	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr5:61249800-61250200	Enhancers	H9 Cell Line	embryonic stem cell
10	chr5:61249800-61250200	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr5:61249800-61250200	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr5:61249800-61250400	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr5:61249800-61250600	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr5:61249800-61250600	Enhancers	HMEC	breast
15	chr5:61250000-61250200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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