Variant report

Variant	rs58287925
Chromosome Location	chr4:147980428-147980429
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs56937996	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72947707	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72947709	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880240	chr4:147905897-148032003	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1016598	chr4:147931134-148012064	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:147979000-147981400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr4:147979000-147981600	Weak transcription	Brain Substantia Nigra	brain
3	chr4:147979000-147981800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr4:147979000-147986200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr4:147979200-147981200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr4:147979200-147981200	Enhancers	Primary B cells from cord blood	blood
7	chr4:147979200-147981200	Weak transcription	Psoas Muscle	Psoas
8	chr4:147979200-147981400	Weak transcription	Colon Smooth Muscle	Colon
9	chr4:147979200-147981400	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr4:147979200-147981400	Weak transcription	HSMM	muscle
11	chr4:147979200-147981400	Weak transcription	HSMMtube	muscle
12	chr4:147979200-147981800	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr4:147979200-147982400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr4:147979200-147982400	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr4:147979200-147982600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr4:147979400-147981000	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr4:147979400-147981000	Weak transcription	Fetal Lung	lung
18	chr4:147979400-147981200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr4:147979400-147981200	Weak transcription	NH-A	brain
20	chr4:147979400-147981400	Weak transcription	Adipose Nuclei	Adipose
21	chr4:147979400-147981400	Weak transcription	Osteobl	bone
22	chr4:147979400-147983200	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr4:147979600-147980800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr4:147979600-147981400	Weak transcription	NHLF	lung
25	chr4:147979800-147981000	Enhancers	Primary B cells from peripheral blood	blood
26	chr4:147979800-147982800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr4:147979800-147984000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr4:147980000-147980600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr4:147980000-147982800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr4:147980000-147983000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr4:147980400-147980600	Enhancers	Fetal Muscle Leg	muscle
32	chr4:147980400-147982600	Enhancers	NHDF-Ad	bronchial
33	chr4:147980400-147983000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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