Variant report

Variant	rs582991
Chromosome Location	chr5:17167535-17167536
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:17161613..17163573-chr5:17165443..17168121,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs13169507	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025225	chr5:16714512-17234866	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv880277	chr5:16829442-17316288	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv1026025	chr5:17039665-17195440	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv830218	chr5:17093162-17290045	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	nsv1029959	chr5:17133214-17455995	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:17155200-17181200	Weak transcription	Hela-S3	cervix
2	chr5:17158400-17167600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr5:17161200-17186400	Weak transcription	Fetal Brain Female	brain
4	chr5:17163800-17169200	Weak transcription	HSMMtube	muscle
5	chr5:17164200-17167600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr5:17164200-17167800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr5:17164400-17168400	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr5:17165600-17167600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr5:17166800-17167800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr5:17167000-17168600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr5:17167200-17168000	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr5:17167200-17168000	Enhancers	Adipose Nuclei	Adipose
13	chr5:17167200-17168000	Enhancers	NH-A	brain
14	chr5:17167200-17168200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr5:17167200-17168400	Enhancers	H1 Cell Line	embryonic stem cell
16	chr5:17167200-17168400	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr5:17167200-17168600	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr5:17167200-17168600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr5:17167200-17169600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr5:17167200-17171000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr5:17167400-17167600	Enhancers	NHLF	lung
22	chr5:17167400-17167800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
23	chr5:17167400-17168000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr5:17167400-17168000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr5:17167400-17168200	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr5:17167400-17168400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr5:17167400-17168400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr5:17167400-17168600	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chr5:17167400-17169800	Enhancers	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links