Variant report

Variant	rs58301746
Chromosome Location	chr9:101258475-101258476
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16916500	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16916631	1.00[AMR][1000 genomes]
rs73488475	1.00[AMR][1000 genomes]
rs73505055	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7855682	1.00[AMR][1000 genomes]
rs7860868	1.00[AMR][1000 genomes]
rs7874983	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831665	chr9:101170061-101367692	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv614936	chr9:101182698-101680380	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv6630	chr9:101236324-101267349	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101247000-101263800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr9:101248400-101264200	Weak transcription	Brain Angular Gyrus	brain
3	chr9:101248800-101264200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr9:101251600-101263800	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr9:101256200-101258800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr9:101256800-101258800	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr9:101256800-101264600	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr9:101257200-101258600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr9:101258200-101262600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr9:101258200-101262800	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr9:101258200-101265200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr9:101258400-101266600	Weak transcription	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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