Variant report

Variant	rs58305262
Chromosome Location	chr2:205837122-205837123
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:205805282..205807936-chr2:205834299..205837286,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs6718851	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998485	chr2:205407813-206184006	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv536122	chr2:205407813-206184006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1010210	chr2:205489653-206076013	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2757846	chr2:205539832-205841174	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2759111	chr2:205539832-205841174	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:205826400-205845400	Weak transcription	HSMM	muscle
2	chr2:205829000-205838800	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr2:205829400-205837600	Enhancers	Primary T cells from cord blood	blood
4	chr2:205829600-205837800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr2:205830000-205837600	Weak transcription	Aorta	Aorta
6	chr2:205831200-205837400	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr2:205832000-205837400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr2:205832200-205837400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr2:205832200-205837400	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr2:205832200-205837400	Weak transcription	Pancreas	Pancrea
11	chr2:205832400-205837400	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr2:205832400-205837800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr2:205832600-205837400	Weak transcription	Adipose Nuclei	Adipose
14	chr2:205832600-205837400	Weak transcription	Brain Anterior Caudate	brain
15	chr2:205832600-205837400	Weak transcription	Brain Hippocampus Middle	brain
16	chr2:205832600-205837400	Weak transcription	Spleen	Spleen
17	chr2:205832800-205837400	Weak transcription	Left Ventricle	heart
18	chr2:205832800-205837600	Weak transcription	Fetal Intestine Small	intestine
19	chr2:205832800-205837800	Weak transcription	Lung	lung
20	chr2:205833000-205837600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
21	chr2:205833200-205837800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
22	chr2:205833400-205837600	Enhancers	Primary T killer memory cells from peripheral blood	blood
23	chr2:205833400-205838000	Enhancers	Primary T helper naive cells from peripheral blood	blood
24	chr2:205833400-205838000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
25	chr2:205835200-205838600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr2:205835600-205837800	Enhancers	Primary hematopoietic stem cells	blood
27	chr2:205835600-205838000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr2:205835800-205838000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr2:205835800-205839000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr2:205836200-205837200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr2:205836200-205837200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr2:205836200-205837400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr2:205836200-205837400	Enhancers	Brain Substantia Nigra	brain
34	chr2:205836200-205837400	Weak transcription	Colon Smooth Muscle	Colon
35	chr2:205836200-205837400	Weak transcription	Stomach Smooth Muscle	stomach
36	chr2:205836200-205838200	Enhancers	Pancreatic Islets	Pancreatic Islet
37	chr2:205836200-205839400	Enhancers	Primary T helper cells PMA-I stimulated	--
38	chr2:205836400-205837400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr2:205836400-205837400	Weak transcription	Rectal Smooth Muscle	rectum
40	chr2:205836400-205838000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr2:205836600-205837400	Weak transcription	Fetal Kidney	kidney
42	chr2:205836600-205837600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
43	chr2:205836600-205842600	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr2:205836800-205837200	Weak transcription	Fetal Lung	lung
45	chr2:205836800-205837200	Weak transcription	Fetal Stomach	stomach
46	chr2:205836800-205837600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr2:205836800-205837800	Weak transcription	Primary T cells fromperipheralblood	blood
48	chr2:205837000-205837400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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