Variant report

Variant	rs58313606
Chromosome Location	chr6:5856815-5856816
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10452676	1.00[AMR][1000 genomes]
rs2146455	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2146456	1.00[AMR][1000 genomes]
rs2181353	1.00[AMR][1000 genomes]
rs2840228	1.00[AMR][1000 genomes]
rs60376781	1.00[AMR][1000 genomes]
rs60788990	1.00[AMR][1000 genomes]
rs61286122	1.00[AMR][1000 genomes]
rs73720220	1.00[AMR][1000 genomes]
rs73720224	1.00[AMR][1000 genomes]
rs73720274	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73720277	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9504613	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5183	chr6:5821731-5866796	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5852200-5865600	Weak transcription	Primary T cells from cord blood	blood
2	chr6:5852400-5865400	Weak transcription	Spleen	Spleen
3	chr6:5856000-5857000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links