Variant report

Variant	rs58315091
Chromosome Location	chr19:41864817-41864818
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:41864348..41865900-chr19:41868639..41870352,2	MCF-7	breast:
2	chr19:41830987..41833840-chr19:41863132..41865918,2	MCF-7	breast:
3	chr19:41859483..41864125-chr19:41864354..41869446,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000105329	Chromatin interaction
ENSG00000123810	Chromatin interaction
ENSG00000142046	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10425437	1.00[AMR][1000 genomes]
rs61414323	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1802868	chr19:41856886-41869392	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	17 gene(s)	inside rSNPs	diseases
2	nsv521311	chr19:41856886-41882712	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:41859800-41868200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr19:41860200-41865000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr19:41860200-41869000	Weak transcription	Gastric	stomach
4	chr19:41860400-41865800	Enhancers	Primary T cells fromperipheralblood	blood
5	chr19:41860400-41868200	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr19:41860400-41868600	Weak transcription	GM12878-XiMat	blood
7	chr19:41860400-41868800	Weak transcription	Hela-S3	cervix
8	chr19:41860400-41869000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr19:41860400-41869000	Weak transcription	Brain Angular Gyrus	brain
10	chr19:41860400-41869000	Weak transcription	Rectal Smooth Muscle	rectum
11	chr19:41860400-41869200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr19:41860400-41869200	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr19:41860400-41869200	Weak transcription	HSMMtube	muscle
14	chr19:41860400-41869200	Weak transcription	HUVEC	blood vessel
15	chr19:41860400-41869200	Weak transcription	NHDF-Ad	bronchial
16	chr19:41860400-41869200	Weak transcription	NHLF	lung
17	chr19:41860400-41869400	Weak transcription	Aorta	Aorta
18	chr19:41860400-41869400	Weak transcription	Ovary	ovary
19	chr19:41860600-41866800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr19:41860600-41866800	Weak transcription	A549	lung
21	chr19:41860600-41868200	Weak transcription	Fetal Intestine Small	intestine
22	chr19:41860600-41868200	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr19:41860600-41868400	Weak transcription	Duodenum Mucosa	Duodenum
24	chr19:41860600-41868600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr19:41860600-41868800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr19:41860600-41869000	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr19:41860600-41869200	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr19:41860600-41869200	Weak transcription	Brain Substantia Nigra	brain
29	chr19:41860600-41869200	Weak transcription	Esophagus	oesophagus
30	chr19:41860600-41869200	Weak transcription	Osteobl	bone
31	chr19:41860800-41868600	Weak transcription	Pancreas	Pancrea
32	chr19:41860800-41869200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr19:41860800-41869200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr19:41860800-41869200	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr19:41860800-41869200	Weak transcription	Right Ventricle	heart
36	chr19:41861000-41868400	Weak transcription	Dnd41	blood
37	chr19:41861000-41868600	Weak transcription	Fetal Brain Female	brain
38	chr19:41861000-41869200	Weak transcription	Liver	Liver
39	chr19:41861200-41869200	Weak transcription	Fetal Kidney	kidney
40	chr19:41861400-41869000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr19:41861600-41868400	Weak transcription	K562	blood
42	chr19:41861600-41868800	Weak transcription	Stomach Smooth Muscle	stomach
43	chr19:41862000-41866800	Weak transcription	Fetal Stomach	stomach
44	chr19:41862000-41869000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr19:41862000-41869000	Weak transcription	Brain Anterior Caudate	brain
46	chr19:41862000-41869000	Weak transcription	Brain Hippocampus Middle	brain
47	chr19:41862000-41869200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr19:41863000-41868600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr19:41863000-41868800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr19:41863200-41865000	Enhancers	Primary T helper cells fromperipheralblood	blood

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