Variant report

Variant	rs58317364
Chromosome Location	chr7:103273749-103273750
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr7:103273520-103273808	MCF10A-Er-Src	breast:	n/a	chr7:103273565-103273574
2	JUND	chr7:103273435-103273927	SK-N-SH	brain:	n/a	chr7:103273579-103273588
3	FOS	chr7:103273405-103273837	MCF10A-Er-Src	breast:	n/a	chr7:103273564-103273575 chr7:103273579-103273588
4	MYC	chr7:103273484-103274133	MCF10A-Er-Src	breast:	n/a	chr7:103273885-103273895 chr7:103273966-103273976
5	EP300	chr7:103273403-103273879	SK-N-SH	brain:	n/a	n/a
6	GATA3	chr7:103273331-103273866	SK-N-SH	brain:	n/a	n/a
7	GATA3	chr7:103273282-103273925	SK-N-SH	brain:	n/a	n/a
8	STAT3	chr7:103273537-103273773	MCF10A-Er-Src	breast:	n/a	chr7:103273565-103273574
9	TEAD4	chr7:103273414-103273924	SK-N-SH	brain:	n/a	n/a
10	FOS	chr7:103273449-103273824	MCF10A-Er-Src	breast:	n/a	chr7:103273564-103273575 chr7:103273579-103273588
11	FOSL2	chr7:103273331-103273888	SK-N-SH	brain:	n/a	chr7:103273579-103273588
12	FOS	chr7:103273443-103273802	MCF10A-Er-Src	breast:	n/a	chr7:103273564-103273575 chr7:103273579-103273588
13	NFIC	chr7:103273320-103273912	SK-N-SH	brain:	n/a	n/a
14	FOS	chr7:103273006-103273819	HUVEC	blood vessel:	n/a	chr7:103273564-103273575 chr7:103273579-103273588
15	TCF12	chr7:103273340-103273914	SK-N-SH	brain:	n/a	n/a
16	FOS	chr7:103273483-103273796	MCF10A-Er-Src	breast:	n/a	chr7:103273564-103273575 chr7:103273579-103273588
17	CEBPB	chr7:103273502-103273791	IMR90	lung:	n/a	n/a
18	TCF12	chr7:103273366-103273821	SK-N-SH	brain:	n/a	n/a
19	JUND	chr7:103273462-103273828	SK-N-SH	brain:	n/a	chr7:103273579-103273588
20	PBX3	chr7:103273381-103273921	SK-N-SH	brain:	n/a	n/a

Variant related genes	Relation type
RELN	TF binding region

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10261317	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10487161	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10953389	0.84[ASN][1000 genomes]
rs1122672	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12668066	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12674323	0.88[ASN][1000 genomes]
rs2017179	0.83[ASN][1000 genomes]
rs2191707	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2215537	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2240965	0.82[ASN][1000 genomes]
rs3025967	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34147889	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34568163	0.83[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs362643	0.88[EUR][1000 genomes]
rs362645	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs362682	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs362689	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs362691	0.87[EUR][1000 genomes]
rs57439348	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59244914	0.99[ASN][1000 genomes]
rs977638	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs977639	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491911	chr7:102967150-103403622	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831085	chr7:103140672-103342388	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv427799	chr7:103250733-103454202	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv1835816	chr7:103255144-103354223	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103271200-103275800	Weak transcription	HepG2	liver
2	chr7:103271200-103276800	Weak transcription	NHLF	lung
3	chr7:103271200-103277000	Weak transcription	NHDF-Ad	bronchial
4	chr7:103272400-103274800	Enhancers	Muscle Satellite Cultured Cells	--
5	chr7:103272600-103273800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr7:103272600-103273800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr7:103272600-103273800	Enhancers	Osteobl	bone
8	chr7:103272600-103274200	Enhancers	NH-A	brain
9	chr7:103272600-103274400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr7:103272600-103274400	Enhancers	NHEK	skin
11	chr7:103272800-103274200	Enhancers	HUVEC	blood vessel
12	chr7:103272800-103274400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr7:103273000-103276600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr7:103273000-103283600	Weak transcription	K562	blood
15	chr7:103273200-103276600	Weak transcription	HMEC	breast
16	chr7:103273600-103274200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links