Variant report

Variant	rs58327921
Chromosome Location	chr7:103847841-103847842
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:103846497..103848385-chr7:103909952..103912269,2	MCF-7	breast:
2	chr7:103628555..103630772-chr7:103847007..103849982,2	K562	blood:
3	chr7:103846124..103848372-chr7:103861589..103863576,2	MCF-7	breast:
4	chr7:103847011..103848620-chr7:142657967..142659467,2	MCF-7	breast:
5	chr7:103833753..103835540-chr7:103846175..103847854,2	K562	blood:

Variant related genes	Relation type
ENSG00000189056	Chromatin interaction
ENSG00000197993	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10487188	1.00[AMR][1000 genomes]
rs10487189	1.00[AMR][1000 genomes]
rs12113380	1.00[AMR][1000 genomes]
rs17159469	1.00[AMR][1000 genomes]
rs17159574	1.00[AMR][1000 genomes]
rs17159582	1.00[AMR][1000 genomes]
rs17159699	1.00[AMR][1000 genomes]
rs17159721	1.00[AMR][1000 genomes]
rs17159937	1.00[AMR][1000 genomes]
rs2307401	1.00[AMR][1000 genomes]
rs57996204	1.00[AMR][1000 genomes]
rs7781770	1.00[AMR][1000 genomes]
rs7794585	1.00[AMR][1000 genomes]
rs7801202	1.00[AMR][1000 genomes]
rs7811249	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019640	chr7:103813522-103884705	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
2	nsv1026481	chr7:103813522-103890770	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
3	esv2762692	chr7:103813522-103890782	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
4	nsv526062	chr7:103817597-103891085	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
5	nsv608065	chr7:103817597-103990755	Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103846200-103849200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr7:103846200-103849400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr7:103846400-103849400	Active TSS	A549	lung
4	chr7:103846600-103848000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr7:103846600-103849000	Active TSS	K562	blood
6	chr7:103846600-103849400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr7:103846800-103848000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr7:103846800-103848200	Flanking Active TSS	Adipose Nuclei	Adipose
9	chr7:103846800-103849200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr7:103847000-103848000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
11	chr7:103847000-103848000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
12	chr7:103847000-103848000	Flanking Active TSS	Brain Germinal Matrix	brain
13	chr7:103847000-103848000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
14	chr7:103847000-103849000	Active TSS	Fetal Kidney	kidney
15	chr7:103847000-103849200	Active TSS	ES-I3 Cell Line	embryonic stem cell
16	chr7:103847000-103849200	Active TSS	iPS-20b Cell Line	embryonic stem cell
17	chr7:103847000-103849400	Active TSS	HUES6 Cell Line	embryonic stem cell
18	chr7:103847000-103849400	Active TSS	Right Ventricle	heart
19	chr7:103847000-103849400	Active TSS	GM12878-XiMat	blood
20	chr7:103847200-103848000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
21	chr7:103847200-103848000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr7:103847200-103848000	Flanking Active TSS	Brain Cingulate Gyrus	brain
23	chr7:103847200-103848000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
24	chr7:103847200-103848200	Flanking Active TSS	Primary hematopoietic stem cells	blood
25	chr7:103847200-103848200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
26	chr7:103847200-103849000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr7:103847200-103849000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr7:103847200-103849000	Active TSS	Fetal Intestine Large	intestine
29	chr7:103847200-103849200	Active TSS	H1 Cell Line	embryonic stem cell
30	chr7:103847200-103849200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr7:103847200-103849200	Active TSS	Left Ventricle	heart
32	chr7:103847200-103849400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr7:103847400-103848000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
34	chr7:103847400-103848000	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
35	chr7:103847400-103848000	Flanking Active TSS	Thymus	Thymus
36	chr7:103847400-103848800	Active TSS	Lung	lung
37	chr7:103847400-103848800	Active TSS	NH-A	brain
38	chr7:103847400-103849000	Active TSS	H9 Cell Line	embryonic stem cell
39	chr7:103847400-103849000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr7:103847400-103849000	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
41	chr7:103847400-103849000	Active TSS	Esophagus	oesophagus
42	chr7:103847400-103849000	Active TSS	Pancreatic Islets	Pancreatic Islet
43	chr7:103847400-103849000	Active TSS	Fetal Muscle Trunk	muscle
44	chr7:103847400-103849000	Active TSS	Pancreas	Pancrea
45	chr7:103847400-103849000	Active TSS	NHLF	lung
46	chr7:103847400-103849200	Active TSS	HUES64 Cell Line	embryonic stem cell
47	chr7:103847400-103849200	Active TSS	HSMM	muscle
48	chr7:103847400-103849400	Active TSS	iPS-15b Cell Line	embryonic stem cell
49	chr7:103847400-103849400	Active TSS	Ovary	ovary
50	chr7:103847600-103848000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood

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