Variant report

Variant	rs58330345
Chromosome Location	chr11:57339968-57339969
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs36112164	1.00[AFR][1000 genomes]
rs58516757	1.00[AFR][1000 genomes]
rs61546978	1.00[AFR][1000 genomes]
rs73478616	1.00[AFR][1000 genomes]
rs73478628	1.00[AFR][1000 genomes]
rs73478629	1.00[AFR][1000 genomes]
rs73478635	1.00[AFR][1000 genomes]
rs73478639	1.00[AFR][1000 genomes]
rs73478647	1.00[AFR][1000 genomes]
rs73478654	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044030	chr11:57073395-58035564	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
2	nsv541047	chr11:57073395-58035564	Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv530621	chr11:57139699-57703639	Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
4	nsv1051032	chr11:57290124-57363064	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv541049	chr11:57290124-57363064	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
6	nsv1052073	chr11:57297499-57362802	Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
7	nsv541050	chr11:57297499-57362802	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
8	nsv832163	chr11:57299354-57481050	Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
9	nsv1040913	chr11:57315006-57696122	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57336200-57340000	Weak transcription	Spleen	Spleen
2	chr11:57336200-57341200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:57336400-57341400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:57337000-57341000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr11:57337200-57341200	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr11:57337200-57341400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr11:57337200-57341400	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr11:57337200-57341400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr11:57337200-57341400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr11:57337400-57340800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr11:57337400-57341000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr11:57337400-57341200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:57337400-57341400	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr11:57338000-57340400	Enhancers	Dnd41	blood
15	chr11:57338000-57340600	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr11:57338200-57340000	Enhancers	Primary hematopoietic stem cells	blood
17	chr11:57338400-57340000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr11:57338600-57340000	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr11:57338600-57340600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr11:57339600-57340200	Enhancers	Monocytes-CD14+_RO01746	blood

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