Variant report

Variant	rs58333376
Chromosome Location	chr7:25814928-25814929
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17152249	1.00[AMR][1000 genomes]
rs6966064	1.00[AMR][1000 genomes]
rs6973956	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016813	chr7:25405859-26150509	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
2	nsv538803	chr7:25405859-26150509	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25810200-25815200	Weak transcription	Adipose Nuclei	Adipose
2	chr7:25810200-25815600	Weak transcription	Fetal Muscle Leg	muscle
3	chr7:25810600-25815400	Weak transcription	Colon Smooth Muscle	Colon
4	chr7:25810600-25815600	Weak transcription	Aorta	Aorta
5	chr7:25810600-25815800	Weak transcription	Stomach Smooth Muscle	stomach
6	chr7:25811000-25815800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr7:25811200-25815600	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr7:25811200-25816000	Weak transcription	Rectal Smooth Muscle	rectum
9	chr7:25813800-25817600	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr7:25814600-25815600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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