Variant report

Variant	rs58338149
Chromosome Location	chr10:18300432-18300433
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10828127	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11012311	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11012314	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11012330	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11012333	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12356631	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12358478	0.90[AMR][1000 genomes]
rs16916787	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2357781	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs67406532	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs67552121	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415320	chr10:18122232-18333356	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1039655	chr10:18252931-18348954	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18298400-18301000	Enhancers	NH-A	brain
2	chr10:18298800-18301000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr10:18299400-18300600	Enhancers	Osteobl	bone
4	chr10:18299600-18300600	Weak transcription	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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