Variant report

Variant	rs58338621
Chromosome Location	chr20:41082328-41082329
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs2076081	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2076082	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6016798	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6016801	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6030251	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6030252	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6030253	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6065482	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6130136	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6130137	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751913	chr20:40422982-41269321	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv532516	chr20:40451059-41097155	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv833987	chr20:41007663-41184914	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:41077800-41087200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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