Variant report

Variant	rs58338739
Chromosome Location	chr20:23340132-23340133
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:24)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:24 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr20:23339900-23340234	K562	blood:	n/a	n/a
2	POLR2A	chr20:23339848-23340225	K562	blood:	n/a	n/a
3	FOXA1	chr20:23339241-23340252	HepG2	liver:	n/a	chr20:23339810-23339825
4	TBP	chr20:23339659-23340283	HepG2	liver:	n/a	n/a
5	FOXA1	chr20:23339576-23340225	HepG2	liver:	n/a	chr20:23339810-23339825
6	FOXA2	chr20:23339595-23340238	HepG2	liver:	n/a	n/a
7	FOXA1	chr20:23339487-23340142	HepG2	liver:	n/a	chr20:23339810-23339825
8	NR2F2	chr20:23339923-23340254	K562	blood:	n/a	n/a
9	RCOR1	chr20:23340034-23340190	HepG2	liver:	n/a	n/a
10	POLR2A	chr20:23339707-23340215	HepG2	liver:	n/a	n/a
11	MYC	chr20:23339702-23340271	K562	blood:	n/a	n/a
12	MAX	chr20:23339899-23340196	K562	blood:	n/a	n/a
13	MAX	chr20:23339932-23340231	K562	blood:	n/a	n/a
14	ARID3A	chr20:23339603-23340226	HepG2	liver:	n/a	n/a
15	MAX	chr20:23339854-23340265	K562	blood:	n/a	n/a
16	MAX	chr20:23339942-23340150	NB4	blood:	n/a	n/a
17	MYC	chr20:23340039-23340140	K562	blood:	n/a	n/a
18	HEY1	chr20:23339540-23340271	HepG2	liver:	n/a	n/a
19	ARID3A	chr20:23339920-23340231	K562	blood:	n/a	n/a
20	FOXA2	chr20:23339094-23340267	HepG2	liver:	n/a	n/a
21	POLR2A	chr20:23338206-23340367	HepG2	liver:	n/a	n/a
22	MAX	chr20:23339937-23340143	HepG2	liver:	n/a	n/a
23	MXI1	chr20:23338337-23340257	HepG2	liver:	n/a	chr20:23338838-23338847
24	MYC	chr20:23339908-23340220	K562	blood:	n/a	n/a

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr20:23339592..23341756-chr20:23608896..23611631,2	MCF-7	breast:
2	chr20:23338880..23340972-chr20:23401257..23403000,2	K562	blood:
3	chr17:56735124..56736858-chr20:23339891..23342718,2	MCF-7	breast:
4	chr20:23339508..23341460-chr20:23392267..23394338,2	MCF-7	breast:
5	chr20:23337918..23344174-chr20:23400107..23404916,9	MCF-7	breast:
6	chr20:23339311..23341771-chr20:23390617..23393220,2	MCF-7	breast:
7	chr20:23339750..23342379-chr20:23399207..23403196,4	MCF-7	breast:
8	chr20:23338809..23345308-chr20:23399768..23403114,12	K562	blood:
9	chr20:23277266..23279560-chr20:23339707..23341405,2	K562	blood:

No data

Variant related genes	Relation type
GZF1	TF binding region
ENSG00000232645	TF binding region
ENSG00000202077	Chromatin interaction
ENSG00000125814	Chromatin interaction

rs_ID	r²[population]
rs12625187	1.00[ASN][1000 genomes]
rs12625468	0.96[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs3761276	1.00[ASN][1000 genomes]
rs59852988	0.81[AFR][1000 genomes]
rs73901826	0.84[AFR][1000 genomes]
rs8117246	0.83[AFR][1000 genomes]
rs8125332	0.84[AFR][1000 genomes]

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23338800-23341800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr20:23338800-23341800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr20:23338800-23341800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr20:23338800-23341800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr20:23338800-23341800	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr20:23338800-23342000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr20:23338800-23342000	Weak transcription	Gastric	stomach
8	chr20:23339200-23340200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr20:23339200-23341600	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr20:23339200-23341600	Weak transcription	HSMMtube	muscle
11	chr20:23339200-23341800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr20:23339200-23341800	Weak transcription	Esophagus	oesophagus
13	chr20:23339200-23341800	Weak transcription	Lung	lung
14	chr20:23339200-23341800	Weak transcription	Ovary	ovary
15	chr20:23339200-23342000	Weak transcription	Aorta	Aorta
16	chr20:23339200-23342200	Weak transcription	Spleen	Spleen
17	chr20:23339400-23340200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr20:23339400-23340200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr20:23339400-23340200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr20:23339400-23340200	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr20:23339400-23340200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr20:23339400-23340200	Enhancers	Fetal Muscle Trunk	muscle
23	chr20:23339400-23340200	Enhancers	Left Ventricle	heart
24	chr20:23339400-23340200	Enhancers	Psoas Muscle	Psoas
25	chr20:23339400-23340200	Enhancers	Sigmoid Colon	Sigmoid Colon
26	chr20:23339400-23340400	Enhancers	Cortex derived primary cultured neurospheres	brain
27	chr20:23339400-23340800	Enhancers	Pancreas	Pancrea
28	chr20:23339400-23341200	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr20:23339400-23341200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr20:23339400-23341200	Weak transcription	NHDF-Ad	bronchial
31	chr20:23339400-23341400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr20:23339400-23341400	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr20:23339400-23341400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr20:23339400-23341600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr20:23339400-23341600	Enhancers	Fetal Intestine Large	intestine
36	chr20:23339400-23341600	Weak transcription	NH-A	brain
37	chr20:23339400-23341800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
38	chr20:23339400-23341800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr20:23339400-23341800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr20:23339400-23341800	Enhancers	Fetal Intestine Small	intestine
41	chr20:23339400-23341800	Weak transcription	Right Atrium	heart
42	chr20:23339400-23341800	Weak transcription	Right Ventricle	heart
43	chr20:23339600-23340200	Enhancers	HMEC	breast
44	chr20:23339600-23340400	Enhancers	Liver	Liver
45	chr20:23339600-23341200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr20:23339600-23341200	Weak transcription	Adipose Nuclei	Adipose
47	chr20:23339600-23341200	Weak transcription	Fetal Brain Male	brain
48	chr20:23339600-23341200	Weak transcription	Osteobl	bone
49	chr20:23339600-23341400	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr20:23339600-23341400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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