Variant report

Variant	rs58342834
Chromosome Location	chr4:7646795-7646796
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11932646	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11936769	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2107174	0.83[EUR][1000 genomes]
rs2107175	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916610	chr4:7238883-7731946	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	esv34156	chr4:7526515-7750588	Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv878570	chr4:7534603-7836835	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv491712	chr4:7582506-8155069	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv508272	chr4:7591967-7722112	Strong transcription Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv878571	chr4:7637297-7743283	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:7642600-7647200	Weak transcription	HepG2	liver
2	chr4:7644600-7652600	Weak transcription	Brain Anterior Caudate	brain
3	chr4:7644800-7647200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr4:7644800-7649600	Weak transcription	Ovary	ovary
5	chr4:7644800-7652600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr4:7644800-7652800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr4:7645600-7648200	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr4:7646000-7646800	ZNF genes & repeats	Liver	Liver
9	chr4:7646000-7647000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr4:7646000-7648800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr4:7646200-7648800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
12	chr4:7646400-7647800	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr4:7646600-7647600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr4:7646600-7649400	Weak transcription	Duodenum Mucosa	Duodenum
15	chr4:7646600-7651200	Weak transcription	HSMMtube	muscle
16	chr4:7646600-7651400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr4:7646600-7652000	Weak transcription	Brain Substantia Nigra	brain
18	chr4:7646600-7656400	Enhancers	Primary monocytes fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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